Advances in gene-targeted diagnostics for pathogenic Escherichia coli

Pathogenic Escherichia coli (PEC) strains are important pathogens that causes a variety of infectious diseases in humans. Traditional bacterial culture and biochemical identification methods are time-consuming and lack specificity, making rapid and accurate diagnosis challenging. Molecular detection techniques, with their high sensitivity, specificity, and rapidity, have become increasingly important for identifying, typing, and tracing PEC. This review systematically sorts out the main target genes currently used for molecular detection of PEC, including virulence genes and marker genes of intestinal PEC and extraintestinal PEC. It also details the progress of mainstream molecular assays, such as polymerase chain reaction and its derivatives, multiple isothermal amplification technologies, biosensors, genome sequencing, integrated devices, and emerging detection methods. Despite significant advancements, challenges remain in differentiating live from dead bacteria, handling complex sample matrices, standardization, and cost control. Future developments in PEC molecular testing will focus on integrating macro-genomics, biosensors, and artificial intelligence to achieve more automated, intelligent, high-throughput, and field-deployable solutions, thereby providing robust support for disease prevention, control, and food safety assurance.