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Repurposing a Q-ToF Collision Cell into a Stacked-Ring Ion Trap for Controlled Ion-Molecule Reactions with Minimal
Chong Zhang1, Jake P Violi1, Christopher S Hansen1
1School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia.
Journal of the American Society for Mass Spectrometry
|December 10, 2025
Summary
Researchers repurposed a commercial mass spectrometer
Area of Science:
- Analytical Chemistry
- Physical Chemistry
Background:
- Ion-molecule reactions are crucial for understanding chemical processes.
- Studying these reactions typically requires specialized equipment.
Purpose of the Study:
- To demonstrate that ion-molecule reactions can be studied on a commercial quadrupole time-of-flight mass spectrometer (Q-ToF MS).
- To achieve this by reconfiguring the collision cell into a stacked-ring ion trap (SRIT) without mechanical changes.
Main Methods:
- Electronically reconfigured a commercial Q-ToF MS collision cell into a SRIT.
- Stored various ions, including large biomolecules like lysozyme and cytochrome c.
- Performed proton-transfer reactions and analyzed product ions.
- Assessed ion stability and temperature during trapping.
Main Results:
- Successfully trapped ions with m/z from 59 to 1788 (lysozyme 7+).
- Observed both high and low m/z product ions from a single precursor ion in a proton-transfer reaction.
- Demonstrated stable ion confinement for at least 2 seconds with minimal collisional heating.
- Ion temperatures remained near room temperature.
Conclusions:
- Repurposing a Q-ToF MS collision cell into a SRIT is a straightforward method for studying ion-molecule reactions.
- This approach enables near-ambient condition studies on commercial instruments.
- The method is valuable for fundamental gas-phase ion chemistry and analytical applications.

