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Optimization of a Multiplex RNA-based Expression Assay Using Breast Cancer Archival Material
Published on: August 1, 2018
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Emerging Breast Cancer Subpopulations: Functional Heterogeneity Beyond the Classical Subtypes
Amalia Kotsifaki1, Georgia Kalouda1, Efthymios Karalexis1
1Physiology Laboratory, Medical School, National and Kapodistrian University of Athens, 11527 Athens, Greece.
International Journal of Molecular Sciences
|December 11, 2025
Summary
Breast cancer is more complex than previously thought, with new subtypes identified. These emerging breast cancer (BC) classifications offer better prognosis and guide targeted therapies for aggressive disease.
Area of Science:
- Oncology
- Genomics
- Biomarkers
Background:
- Breast cancer (BC) is recognized as a heterogeneous disease, exceeding traditional classifications like luminal A/B, HER2-enriched, and triple-negative (TNBC).
- Emerging subpopulations such as HER2-low, claudin-low, BRCA-deficient (BRCAness), and refined TNBC subsets (e.g., luminal AR, basal-like immune variants) present new complexities.
- These novel classifications offer enhanced prognostic insight and therapeutic avenues.
Purpose of the Study:
- To comprehensively review emerging breast cancer subtypes beyond classical taxonomies.
- To integrate evidence from multi-omic and liquid biopsy biomarkers in defining these subgroups.
- To highlight the predictive value of these biomarkers for targeted therapies and the role of the tumor microenvironment (TME).
Main Methods:
- Integration of evidence from genomic, epigenetic, and proteomic profiling.
- Analysis of immune-related biomarkers and liquid biopsy data.
- Review of studies investigating the tumor microenvironment (TME) and intratumoral heterogeneity.
Main Results:
- Novel breast cancer classifications, including HER2-low, claudin-low, BRCAness, and refined TNBC subsets, provide greater biological resolution.
- These emerging subtypes are associated with distinct prognoses and predict responses to targeted therapies like antibody-drug conjugates, PARP inhibitors, and immune checkpoint inhibitors.
- The tumor microenvironment (TME) and intratumoral heterogeneity significantly influence the biology and clinical behavior of these emerging breast cancer entities.
Conclusions:
- Recognition of emerging breast cancer subtypes represents a paradigm shift towards dynamic, biomarker-driven precision oncology.
- These clinically actionable groups enable better patient stratification and refined prognosis for aggressive breast cancer.
- A move from static receptor-based models to dynamic, biomarker-driven frameworks is crucial for advancing breast cancer treatment.
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