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New Benzimidazole-Based pH-Sensitive Fluorescent Probes
Artem D Pugachev1, Ivan N Bardasov2, Shorena K Karchava3
1Institute of Physical and Organic Chemistry, Southern Federal University, Stachki Prosp., 194/2, Rostov-on-Don 344090, Russia.
Molecules (Basel, Switzerland)
|December 11, 2025
Summary
New benzimidazole compounds act as pH-sensitive fluorescent probes. Dye 3c shows a strong response and potential for imaging bacterial biofilms with multiphoton microscopy.
Area of Science:
- Organic Chemistry
- Materials Science
- Biotechnology
Background:
- Benzimidazole derivatives are explored for novel optical properties.
- pH-sensitive fluorescent probes are crucial for biological and chemical sensing.
- Bacterial biofilms present challenges in diagnostics and treatment.
Purpose of the Study:
- Synthesize and characterize novel benzimidazole compounds with a propylsulfonate moiety.
- Investigate the pH-dependent optical and photoluminescent properties of these compounds.
- Evaluate their potential as fluorescent probes for bacterial biofilm imaging and toxicity.
Main Methods:
- Synthesis via condensation reactions.
- Structural confirmation using NMR, FT-IR, and HRMS.
- Spectroscopic analysis (absorption, photoluminescence) across a pH range.
- Toxicity assessment using bacterial sensors.
- Bioimaging of bacterial biofilms with multiphoton microscopy.
Main Results:
- Successfully synthesized and characterized new benzimidazole derivatives.
- Compounds exhibit pH-sensitive optical properties, with derivative 3c showing a prominent response from pH ~4.5.
- Demonstrated potential as fluorescent probes for bacterial biofilms, with differential staining of extracellular matrix and cells based on incubation time.
- Dye 3c can be excited at 458 nm or 750 nm for multiphoton imaging.
Conclusions:
- The synthesized benzimidazole compounds are effective pH-sensitive fluorescent probes.
- Derivative 3c is a promising candidate for imaging bacterial biofilms in a biologically relevant pH range.
- The compounds show potential for diagnostic applications in microbiology and materials science.
Keywords:
benzimidazolebioimagingfluorescencemolecular dockingpHsulfonic acidswhole-cell lux-biosensors
