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Updated: Jan 8, 2026

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
Published on: September 5, 2019
Fast-Tracking Transition-State Localization via Reaction Directional Analysis
Peipei Zhang1, Chenxi Guo2, P Hu1,3,4
1Key Laboratory for Advanced Materials, Research Institute of Industrial Catalysis and Centre for Computational Chemistry, East China University of Science and Technology, Shanghai 200237, China.
Abstract:
Transition-state localization is critical for elucidating chemical reaction mechanisms but remains one of the most computationally demanding challenges in theoretical chemistry. Here, we introduce a novel method, reaction directional analysis-dimer (RDA-D), which integrates reaction directional analysis (RDA) with the dimer method to achieve efficient and reliable transition state searching. Reaction directional analysis generates high-quality quasi-transition-state structures directly from only the initial and final state geometries, combining dynamic interpolation, structural optimization, and directional analysis. These quasi-transition-state structures then serve as starting points for refinement via the dimer method. Benchmark tests on a diverse set of gas-phase and catalytic reactions on surfaces demonstrate that RDA-D is, on average, 5.83 times faster than the Nudged Elastic Band (NEB) method in CPU time and reduces the number of gradient evaluations by a factor of 4.74. Moreover, reaction directional analysis eliminates the need for predefined reaction coordinates or chemically intuitive initial guesses, providing a robust, scalable, and automation-friendly framework for transition-state localization.
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