Chimeric human organoid and mouse brain slice co-cultures to study microglial function

Vasiliki Panagiotakopoulou1, Marc Welzer2, Olmo Ruiz Ormaechea1

  • 1Department of Cellular Neurology, Hertie Institute for Clinical Brain Research, University of Tübingen, 72076 Tübingen, Germany; German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany.

Cell Reports
|December 12, 2025
PubMed

Insights

This study introduces a novel chimeric brain model using human organoids and mouse brain slices to mature human microglia. This advanced in vitro system enables long-term study of microglia in a human brain-like environment.

Area of Science:

  • Neuroscience
  • Stem Cell Biology
  • Developmental Biology

Background:

  • Modeling human microglia in vitro is challenging for studying brain development and neurodegenerative diseases.
  • Human organoids (hORGs) model neuronal development but lack mature human microglia.
  • Existing models do not fully replicate the human brain microenvironment for microglia.

Purpose of the Study:

  • To develop an in vitro chimeric model for studying human microglia in a brain-like environment.
  • To investigate cross-species interactions between human organoids and mouse brain slices.
  • To establish a platform for long-term functional studies of human microglia.

Main Methods:

  • Co-culturing human induced pluripotent stem cell-derived organoids (hORGs) with mouse brain slice cultures (mBSCs).
  • Pre-differentiating human iPSC-derived microglia in mBSCs before introduction into hORGs.
  • Utilizing laser-induced injury to assess microglial response and functionality.

Main Results:

  • The chimeric model demonstrated earlier cortical neuronal differentiation markers in hORGs.
  • Human iPSC-derived microglia migrated into hORGs and adopted mature ramified morphology.
  • Microglia remained viable for months and responded to injury, showing long-term functionality.

Conclusions:

  • The developed in vitro chimeric model supports long-term study of human microglia.
  • This system facilitates mechanistic studies and compound screening for microglial function.
  • The model provides a more accurate representation of the human brain microenvironment for microglia research.

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