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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
DNA methylation predicts adverse outcomes of coronary artery disease
Min Qin1,2,3,4,5,6, Xiaoxue Tian1,2,7, Qili Wu1,2
1Department of Pharmacy, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, China.
Insights
DNA methylation markers in blood can predict future death in coronary artery disease (CAD) patients. These epigenetic markers offer valuable insights for prognosis and potential clinical applications in cardiovascular disease.
Area of Science:
- Epigenetics
- Cardiovascular Research
- Genomics
Background:
- Coronary artery disease (CAD) is a major global cause of mortality.
- Adverse outcomes like myocardial infarction (MI) and stroke are significant complications of CAD.
- Predictive biomarkers for CAD prognosis are crucial for timely intervention.
Purpose of the Study:
- To identify DNA methylation markers associated with future mortality in CAD patients.
- To investigate the correlation of these markers with clinical and biological factors.
- To develop and validate a prognostic model for CAD using DNA methylation data.
Main Methods:
- Profiling DNA methylation in blood leukocytes from 933 Chinese CAD patients.
- Utilizing up to 13-year follow-up data from three centers.
- Correlating differentially methylated sites (DMPs) with clinical outcomes, inflammation, cardiac function, and gene expression.
Main Results:
- Identified 70 DMPs linked to future death in CAD patients.
- These DMPs correlated with inflammation, left ventricular function, and HDL cholesterol.
- Discovered FKBP5 as a key gene regulated by specific methylation sites, with its upregulation linked to MI and stroke.
- A prognostic model incorporating 10 methylation sites and 5 clinical features showed superior performance compared to traditional models.
Conclusions:
- DNA methylation patterns in blood serve as valuable predictors of prognosis in CAD.
- Epigenetic markers, such as those regulating FKBP5, play a role in CAD progression and adverse events.
- The developed prognostic model holds potential for clinical translation in improving CAD patient management.
Abstract:
Adverse outcomes including myocardial infarction (MI) and stroke render coronary artery disease (CAD) a leading cause of death worldwide. DNA methylation markers may alert such adversity ahead of the events. We profiled DNA methylation of blood leukocytes in 933 Chinese CAD patients with up-to-13-year follow-up from three centers, identifying 70 differentially methylated sites (DMPs) associated with future death. These DMPs correlated with inflammation markers, left ventricular functions and high-density lipoprotein cholesterol, and impacted gene expression in immune response and cellular scenesence. Notably, cg25563198 and cg25114611 were discovered to regulate FKBP5, whose upregulation persisted during MI and stroke. Fkbp5 knockout in male mice partially rescued MI by reducing infarct size and improving heart function, confirming its critical function. Finally, our prognostic model of 10 methylation sites and 5 clinical features outperformed clinical models. Our study highlights the value of DNA methylation in predicting prognosis in CAD and provides tools for clinical translation.
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