DNA methylation predicts adverse outcomes of coronary artery disease

Min Qin1,2,3,4,5,6, Xiaoxue Tian1,2,7, Qili Wu1,2

  • 1Department of Pharmacy, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, China.

Nature Communications
|December 12, 2025
PubMed

Insights

DNA methylation markers in blood can predict future death in coronary artery disease (CAD) patients. These epigenetic markers offer valuable insights for prognosis and potential clinical applications in cardiovascular disease.

Area of Science:

  • Epigenetics
  • Cardiovascular Research
  • Genomics

Background:

  • Coronary artery disease (CAD) is a major global cause of mortality.
  • Adverse outcomes like myocardial infarction (MI) and stroke are significant complications of CAD.
  • Predictive biomarkers for CAD prognosis are crucial for timely intervention.

Purpose of the Study:

  • To identify DNA methylation markers associated with future mortality in CAD patients.
  • To investigate the correlation of these markers with clinical and biological factors.
  • To develop and validate a prognostic model for CAD using DNA methylation data.

Main Methods:

  • Profiling DNA methylation in blood leukocytes from 933 Chinese CAD patients.
  • Utilizing up to 13-year follow-up data from three centers.
  • Correlating differentially methylated sites (DMPs) with clinical outcomes, inflammation, cardiac function, and gene expression.

Main Results:

  • Identified 70 DMPs linked to future death in CAD patients.
  • These DMPs correlated with inflammation, left ventricular function, and HDL cholesterol.
  • Discovered FKBP5 as a key gene regulated by specific methylation sites, with its upregulation linked to MI and stroke.
  • A prognostic model incorporating 10 methylation sites and 5 clinical features showed superior performance compared to traditional models.

Conclusions:

  • DNA methylation patterns in blood serve as valuable predictors of prognosis in CAD.
  • Epigenetic markers, such as those regulating FKBP5, play a role in CAD progression and adverse events.
  • The developed prognostic model holds potential for clinical translation in improving CAD patient management.