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Updated: Jan 8, 2026

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Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
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Preliminary insights into methylation patterns in Agent Orange exposed thyroid cancers: a pilot study.
Bushra Amreen1, Corina Lesseur1, Hachem Sadikki1
1Department of Environmental Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Environmental Pollution (Barking, Essex : 1987)
|December 13, 2025
Summary
Agent Orange exposure in Vietnam Veterans is linked to thyroid cancer. This study found differential DNA methylation in tumors from exposed veterans, suggesting a molecular mechanism for increased cancer risk.
Area of Science:
- Environmental Health
- Oncology
- Epigenetics
Background:
- US military personnel during the Vietnam War were exposed to Agent Orange, a defoliant contaminated with 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD).
- Agent Orange exposure is associated with an increased risk of thyroid cancer among Vietnam-era Veterans.
- The molecular mechanisms underlying this increased thyroid cancer risk are not well understood.
Purpose of the Study:
- To investigate differential DNA methylation profiles in thyroid tumors from Agent Orange-exposed compared to unexposed Vietnam-era US Veterans.
- To explore potential epigenetic mechanisms linking Agent Orange exposure to thyroid cancer development.
Main Methods:
- Retrospective case-case study of 44 Veterans with differentiated thyroid cancer (23 exposed, 21 unexposed).
- Genome-wide DNA methylation profiling using the Infinium Methylation EPICv2 array.
- Linear regression models adjusted for age, VA location, and cell type proportions; gene set enrichment analysis.
Main Results:
- Agent Orange exposure was associated with differential methylation at 309 CpGs (nominal p < 0.001) in thyroid tumors.
- No significant CpGs were detected after multiple comparison adjustment.
- Top associations included CpGs in cancer-related genes (CELF2, OTX2, SSR1, EBF1); hedgehog signaling and anti-folate resistance pathways were enriched.
Conclusions:
- This exploratory study identified differentially methylated loci potentially linked to thyroid cancer in Agent Orange-exposed Veterans.
- Further research with larger cohorts and biomarker assessment is needed to confirm these findings.
- In vitro models are required to elucidate the mechanisms connecting Agent Orange exposure, DNA methylation, and thyroid cancer.

