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Updated: Jan 8, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Association between early-life antibiotic exposure and gut microbiome alterations linked to allergic diseases in
F N U Sameeha1, Seerat Riaz1, Muhammad Nouman Aslam1
1Department of Medicine, Ibn e Seena Hospital, Kabul, Afghanistan.
Insights
Early antibiotic exposure in children is linked to increased allergy risks due to gut microbiome changes. This systematic review highlights the need for cautious antibiotic use and further research into interventions.
Area of Science:
- Microbiology
- Pediatrics
- Immunology
Background:
- Early-life antibiotic exposure is a potential factor in childhood gut microbiome development.
- Disrupted gut microbiota may contribute to the increased incidence of allergic diseases.
- This review examines the link between early antibiotic use, microbiome alterations, and allergic conditions.
Purpose of the Study:
- To systematically evaluate the association between early antibiotic exposure and the risk of developing allergic diseases.
- To investigate how antibiotic use impacts gut microbiome development in children.
- To synthesize evidence on the relationship between gut dysbiosis and childhood allergies.
Main Methods:
- Systematic review adhering to PRISMA 2020 guidelines.
- Comprehensive literature search across major databases (PubMed, Embase, Web of Science, Cochrane Library).
- Inclusion of observational and interventional studies (prenatal to 10 years), with quality assessment.
Main Results:
- Fifteen studies (over 1.5 million children) indicated a significant association between early antibiotic exposure (prenatal/first two years) and increased allergy risk (asthma, atopic dermatitis).
- Alterations in gut microbiota, including reduced Bifidobacterium and increased Clostridium/Klebsiella, were frequently observed.
- Antibiotic type, duration, and timing were crucial factors influencing microbiota disruption and allergy development.
Conclusions:
- Growing evidence suggests early antibiotic exposure can predispose children to allergies via gut microbiota disturbances.
- Findings support judicious antibiotic use during pregnancy and early childhood.
- Further research is needed on microbiota-preserving interventions and long-term health outcomes.
Background:
Early-life exposure to antibiotics has been implicated in the disruption of gut microbiota development, potentially contributing to the onset of allergic diseases in childhood. This systematic review aimed to evaluate the association between early antibiotic exposure, gut microbiome alterations, and the risk of developing allergic conditions such as asthma, atopic dermatitis, and allergic rhinitis.
Methods:
This review followed PRISMA 2020 guidelines. A comprehensive search of PubMed, Embase, Web of Science, and the Cochrane Library was conducted up to [insert date]. Eligible studies included observational and interventional designs involving participants from the prenatal stage to 10 years of age. Data were extracted on antibiotic type, exposure timing, microbiome changes, and allergic outcomes. Study quality was assessed using the Newcastle-Ottawa Scale for observational studies and the Cochrane Risk of Bias tool for randomized trials.
Results:
Fifteen studies involving over 1.5 million children met the inclusion criteria. The majority reported that antibiotic exposure during the prenatal period or the first two years of life was significantly associated with an increased risk of allergic diseases, particularly asthma and atopic dermatitis. Several studies also documented alterations in gut microbiota composition, including reduced Bifidobacterium and increased Clostridium and Klebsiella spps. Antibiotic type, duration, and timing of exposure were key factors influencing microbiota disruption and allergy development.
Conclusion:
There is growing evidence that early-life antibiotic exposure may predispose children to allergic diseases through gut microbiota disturbances. These findings support the cautious use of antibiotics during pregnancy and early childhood and underscore the need for further research into microbiota-preserving interventions and long-term outcomes.
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