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Integrating differential privacy into federated multi-task learning algorithms in dsMTL.
Roman Schefzik1,2, Han Cao3, Sivanesan Rajan1,2
1Hector Institute for Artificial Intelligence in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, 68159 Mannheim, Germany.
Bioinformatics Advances
|December 15, 2025
Summary
Federated multi-task learning (MTL) in dsMTL now includes differential privacy to protect sensitive data from membership inference attacks. This enhances privacy while maintaining model utility for distributed data analysis.
Area of Science:
- Computational biology
- Bioinformatics
- Statistical learning
Background:
- Multi-task learning (MTL) leverages shared information for simultaneous regression or classification tasks.
- The dsMTL R package facilitates federated MTL using the DataSHIELD platform for distributed, sensitive data analysis.
- Existing dsMTL security is insufficient against membership inference attacks targeting training data inclusion.
Purpose of the Study:
- To enhance the privacy-preserving capabilities of dsMTL against membership inference attacks.
- To integrate differential privacy into dsMTL for protecting individual-level data in federated learning.
- To balance privacy protection with model performance in federated MTL.
Main Methods:
- Implemented differential privacy using the Laplace mechanism as an optional feature in dsMTL.
- Utilized simulation studies and a case study on schizophrenia patient gene expression data for validation.
- Focused on obscuring individual characteristics while preserving group-level differences.
Main Results:
- Successfully integrated differential privacy into the dsMTL framework.
- Demonstrated the effectiveness of differential privacy in protecting against membership inference attacks.
- Validated the approach through simulations and a real-world gene expression data analysis.
Conclusions:
- The novel differential privacy feature in dsMTL significantly enhances data security for federated MTL.
- Achieving an optimal balance between privacy and model performance is critical for practical application.
- dsMTL with differential privacy offers a robust solution for privacy-preserving analysis of distributed sensitive data.
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