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Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
Comparing the effect of traditional and novel tyrosine kinase inhibitors for epidermal growth factor receptor exon 20
Ke-Jun Liu1,2, Tao Jiang3,4, Quan-Quan Tan1
1Guangdong Lung Cancer Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, China.
Abstract:
BackgroundExon 20 insertions of epidermal growth factor receptor (EGFR) exhibit varying sensitivity to traditional and novel tyrosine kinase inhibitors for non-small cell lung cancer.MethodsMolecular dynamics simulations were used to investigate the structural dynamics of wild-type EGFR and three representative exon 20 insertion mutations: V769_D770insASV (ASV), D770_N771insSVD (SVD), and N773_insNPH (NPH). Furthermore, the binding mechanisms of osimertinib and mobocertinib were explored to understand their efficacy across different EGFR variants.ResultsIn this study, we found that binding to osimertinib and mobocertinib changed the free energy landscapes for ASV-, SVD- and NPH-EGFR. Compared with osimertinib, mobocertinib occupies extra space at the back of K745 for the three mutants and forms a hydrogen bond with the gatekeeper residue (T793) using its isopropyl ester group on the pyrimidine ring. When binding to osimertinib, ASV- and SVD-EGFR still revealed two energy minima on their free energy landscapes, but with considerably less conformational probability distribution at collective variable 2 >1.00 Å. In contrast, mobocertinib eliminated the energy minima at collective variable 2 >1.00 Å while decreasing the K745-E762 salt bridge formation rates.ConclusionsMobocertinib outperforms osimertinib in targeting specific subtypes of EGFR exon 20 insertions, highlighting its ability to restore the inactive state of this protein.
Insights
Mobocertinib demonstrates superior efficacy over osimertinib in targeting specific epidermal growth factor receptor (EGFR) exon 20 insertions in non-small cell lung cancer. This study highlights mobocertinib
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Epidermal growth factor receptor (EGFR) exon 20 insertions are key drivers in non-small cell lung cancer (NSCLC).
- These mutations confer variable sensitivity to tyrosine kinase inhibitors (TKIs).
- Understanding the molecular mechanisms of TKI resistance in EGFR exon 20 insertion NSCLC is critical.
Purpose of the Study:
- To investigate the structural dynamics of wild-type EGFR and common exon 20 insertion mutants (ASV, SVD, NPH).
- To explore the binding mechanisms of osimertinib and mobocertinib with these EGFR variants.
- To elucidate the differential efficacy of these TKIs in NSCLC with EGFR exon 20 insertions.
Main Methods:
- Utilized molecular dynamics (MD) simulations to analyze protein dynamics.
- Assessed free energy landscapes to understand conformational changes.
- Examined drug-protein interactions, including hydrogen bonding and salt bridge formation.
Main Results:
- Both osimertinib and mobocertinib binding altered the free energy landscapes of ASV-, SVD-, and NPH-EGFR mutants.
- Mobocertinib formed additional interactions, including a hydrogen bond with the T793 gatekeeper residue.
- Mobocertinib reduced the conformational flexibility and eliminated energy minima observed with osimertinib binding in certain mutants.
Conclusions:
- Mobocertinib exhibits enhanced efficacy compared to osimertinib against specific EGFR exon 20 insertion mutations in NSCLC.
- Mobocertinib's distinct binding mode facilitates the restoration of the inactive EGFR state.
- These findings support mobocertinib as a promising therapeutic option for NSCLC patients with particular EGFR exon 20 insertion profiles.
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