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Budding Yeast Protein Extraction and Purification for the Study of Function, Interactions, and Post-translational Modifications
Published on: October 30, 2013
Insights into LysM proteins of medically important yeasts
1Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Universidad Pública de Navarra (UPNA), Campus de Arrosadia, 31006 Pamplona, Spain.
Abstract:
LysM proteins are widely distributed in fungi of diverse lifestyles, including pathogens of humans and animals. Using bioinformatic methods, LysM proteins have been identified in representative yeasts of medical importance. However, LysM proteins have been found in only four ascomycete yeasts (Candida subhashii, C. tropicalis, Debaryomyces fabryi, and D. hansenii). In contrast, almost all basidiomycete yeasts contain at least one LysM effector but lack subgroup C chitinases. Notably, a unique LysM effector is highly conserved among all the lipid-dependent Malassezia species. The repertoire of LysM proteins in medically important yeasts appears to be more determined by the fungal lifestyle than by host colonization.
Insights
LysM proteins are found in many fungi, including human pathogens. Their presence in yeasts is linked more to fungal lifestyle than host, with unique forms in Malassezia species.
Area of Science:
- Mycology
- Fungal Pathogenesis
- Bioinformatics
Background:
- LysM proteins are crucial in fungi, with roles in diverse lifestyles, including pathogenesis.
- These proteins are present in various yeasts, some of medical importance.
- Previous studies identified LysM proteins in specific ascomycete yeasts.
Purpose of the Study:
- To identify and characterize LysM proteins in medically important yeasts.
- To investigate the distribution and conservation of LysM effectors across different fungal groups.
- To determine factors influencing LysM protein repertoire in yeasts.
Main Methods:
- Bioinformatic analysis of fungal genomes.
- Comparative genomics of LysM protein distribution.
- Phylogenetic analysis of LysM effectors.
Main Results:
- LysM proteins are widespread in fungi, including human and animal pathogens.
- Only four ascomycete yeasts (Candida subhashii, C. tropicalis, Debaryomyces fabryi, D. hansenii) were found to have LysM proteins.
- Basidiomycete yeasts predominantly possess LysM effectors but lack chitinases, with a conserved unique LysM effector in Malassezia species.
Conclusions:
- The presence and type of LysM proteins in medically relevant yeasts are primarily dictated by their intrinsic fungal lifestyle.
- Fungal lifestyle, rather than host association, appears to be the main driver for LysM protein diversity.
- Specific LysM effectors are conserved in lipid-dependent yeasts like Malassezia, suggesting specialized roles.
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