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Updated: Jan 8, 2026

Imaging Metals in Brain Tissue by Laser Ablation - Inductively Coupled Plasma - Mass Spectrometry LA-ICP-MS
Published on: January 22, 2017
Mineral Phase-Resolved Quantification in LA-ICP-MS Imaging
Barbara Umfahrer1, Jakub Buday2, Pavel Pořízka2
1Laboratory of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, Zurich 8093, Switzerland.
Abstract:
Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry (LA-ICP-MS), particularly in its time-of-flight (TOF) configuration, enables rapid, high-resolution elemental imaging across complex geological materials, offering spatial and chemical insights at the micrometer scale. However, quantitative accuracy is often limited in fine-grained or mineralogically heterogeneous matrices due to the failure of global normalization strategies, such as 100 wt % oxide assumptions, to account for mixed-phase compositions. Here, we present a workflow that leverages Uniform Manifold Approximation and Projection (UMAP) for unsupervised dimensionality reduction and k-means clustering to segment mineralogical phases directly from per-pixel elemental concentration maps. Cluster compositions are matched to known minerals based on stoichiometric similarity, enabling pixel-wise, phase-specific normalization (e.g., oxides vs carbonates). Validated with dawsonite-bearing sandstones from Mt. Amiata, Italy, this approach significantly reduces quantification errors, correcting systematic over- or underestimations of up to 60%. The method also enables a consistent, phase-resolved geochemical comparison across depth profiles. This study establishes UMAP not only as an exploratory tool but also as a practical guideline for accurate and interpretable quantification in multielemental imaging.
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