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A Method for Targeted 16S Sequencing of Human Milk Samples
Published on: March 23, 2018
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Time-specific bidirectional links between the maternal microbiome, milk composition, and infant gut microbiota
Lishi Deng1, Kelsey Fehr2, Laeticia Celine Toe3
1Department of Food Technology, Safety and Health, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.
Cell Host & Microbe
|December 18, 2025
Summary
Maternal factors like gut and milk microbes influence infant gut microbiome development. Early infant gut profiles may even signal back to mothers, affecting milk composition.
Area of Science:
- Microbiome research
- Maternal and infant health
- Human lactation
Background:
- Early-life gut microbiome development is influenced by maternal and nutritional factors.
- The temporal dynamics and directional interactions between maternal and infant microbiomes are not well understood.
- Understanding these interactions is crucial for developing targeted interventions.
Purpose of the Study:
- To investigate how maternal gut and milk microbiomes, along with milk components, shape infant gut microbiome development in the first six months.
- To explore the temporal relationships and potential bidirectional communication between maternal and infant microbiomes and milk composition.
Main Methods:
- Longitudinal study of 152 mother-infant dyads in rural Burkina Faso.
- Analysis of maternal gut and milk microbiomes.
- Quantification of milk components (oligosaccharides and other nutrients).
- Characterization of infant gut microbiome development over the first six months.
Main Results:
- Infant gut microbiomes clustered into three distinct types at 1-2 months: Escherichia-dominated, Bifidobacterium-dominated, and a diverse, pathogen-prevalent profile.
- These early infant gut profiles were associated with maternal prenatal gut microbiota and early milk microbiome and oligosaccharides.
- Later infant gut microbiome variation was linked to other milk nutrients.
- Early infant gut microbiome profiles predicted subsequent milk composition, indicating potential bidirectional signaling.
Conclusions:
- Maternal gut and milk microbiomes, along with milk composition, significantly influence early infant gut microbiome development.
- Bidirectional communication may exist between the infant's gut microbiome and maternal lactational physiology.
- Findings provide insights into early microbial development and inform microbiome-targeted interventions, especially in resource-limited settings.
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