IRF4 haploinsufficiency in a multiplex family with Whipple's disease

Sinem Ünal1,2, Stéphanie Dublanc3, Hailun Li1,2

  • 1Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Inserm U1163, Necker Hospital for Sick Children, Paris, France, EU.

Journal of Human Immunity
|December 22, 2025
PubMed

Insights

Rare genetic variants in the IRF4 gene can cause Whipple's disease (WD) even in individuals infected with Tropheryma whipplei. This finding identifies IRF4 haploinsufficiency as a key factor in WD development.

Area of Science:

  • Genetics
  • Immunology
  • Infectious Diseases

Background:

  • Tropheryma whipplei (T. whipplei) bacteria cause Whipple's disease (WD), but only a small fraction of infected individuals develop the condition.
  • The genetic basis for WD susceptibility in T. whipplei-infected individuals remains largely unknown.
  • Previous studies suggested a role for IRF4 gene variants in a large family with WD.

Purpose of the Study:

  • To investigate the genetic cause of Whipple's disease in two unrelated family members.
  • To characterize the functional impact of a specific IRF4 gene variant.
  • To determine if IRF4 haploinsufficiency contributes to WD in additional families.

Main Methods:

  • Whole-exome sequencing was performed on affected mother and son.
  • Biochemical assays characterized the DNA binding and transcriptional activity of the identified IRF4 variant.
  • Immunological analysis of patient leukocytes assessed immune function.

Main Results:

  • Both patients were heterozygous for a rare hypomorphic IRF4 missense variant (p.R25S).
  • This variant impaired IRF4 DNA binding and transcription induction but did not exhibit negative dominance.
  • Immune function was otherwise normal in the patients, supporting IRF4 haploinsufficiency as the cause.

Conclusions:

  • Haploinsufficiency of the IRF4 gene can cause Whipple's disease in Tropheryma whipplei-infected individuals.
  • This genetic susceptibility is present in at least two unrelated families.
  • The findings highlight the importance of genetic factors in determining WD development.

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