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Related Concept Videos

Cryo-electron Microscopy01:28

Cryo-electron Microscopy

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Conventional electron microscopy (EM) involves dehydration, fixation, and staining of biological samples, which distorts the native state of biological molecules and results in several artifacts. Also, the high-energy electron beam damages the sample and makes it difficult to obtain high-resolution images. These issues can be addressed using cryo-EM, which uses frozen samples and gentler electron beams. The technique was developed by Jacques Dubochet, Joachim Frank, and Richard Henderson, for...
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Overview of Electron Microscopy01:25

Overview of Electron Microscopy

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The wavelengths of visible light ultimately limit the maximum theoretical resolution of images created by light microscopes. Most light microscopes can only magnify 1000X, and a few can magnify up to 1500X. Electrons, like electromagnetic radiation, can behave like waves, but with wavelengths of 0.005 nm, they produce significantly greater resolution up to 0.05 nm as compared to 500 nm for visible light. An electron microscope (EM) can create a sharp image that is magnified up to 2,000,000X.
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Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

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Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
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Three-Dimensional Microscopy in Microbiology01:28

Three-Dimensional Microscopy in Microbiology

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Three-dimensional imaging techniques are essential in cell biology, allowing researchers to visualize intricate cellular structures with high resolution. Two prominent methods, Differential Interference Contrast Microscopy (DIC) and Confocal Scanning Laser Microscopy (CSLM), provide distinct advantages for imaging live and thick specimens, respectively.Differential Interference Contrast MicroscopyDIC microscopy enhances contrast in transparent, unstained samples by converting phase...
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Preparation of Samples for Electron Microscopy01:20

Preparation of Samples for Electron Microscopy

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To be visualized by an electron microscope, either transmission or scanning, biological samples need to be fixed (stabilized) so the electron beam does not destroy them and dried thoroughly (desiccated/dehydrated) so the vacuum does not affect them. Fixation needs to be done as quickly as possible because the sample properties will start changing as soon as it is removed from its natural environment. For example, in a tissue sample, the oxygen levels begin decreasing, causing an altered...
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Updated: Jan 8, 2026

Subnanometer-resolution Structural Determination of Hemagglutinin from Cryo-electron Tomography of Influenza Viruses
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Subnanometer-resolution Structural Determination of Hemagglutinin from Cryo-electron Tomography of Influenza Viruses

Published on: November 7, 2025

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An integrated workflow for structural virology with a 100 keV electron microscope.

Rasangi Pathirage1, Moumita Dutta1, Ruth J Parsons1,2

  • 1Duke University, Duke Human Vaccine Institute, Durham NC 27710, USA.

Biorxiv : the Preprint Server for Biology
|December 22, 2025
PubMed
Summary
This summary is machine-generated.

Researchers can now achieve high-quality cryo-electron microscopy (cryo-EM) structural biology in their own labs using a 100 keV microscope. This democratizes access to cryo-EM, enabling independent operation and training for structural determination.

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A Robust Single-Particle Cryo-Electron Microscopy cryo-EM Processing Workflow with cryoSPARC, RELION, and Scipion
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
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A Robust Single-Particle Cryo-Electron Microscopy cryo-EM Processing Workflow with cryoSPARC, RELION, and Scipion
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy

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Area of Science:

  • Structural Biology
  • Biophysics
  • Biochemistry

Background:

  • Cryo-electron microscopy (cryo-EM) is crucial for studying flexible and heterogeneous biological samples.
  • High-end 300 keV cryo-EM microscopes offer high-resolution data but are expensive and have limited accessibility.
  • Limited access to advanced cryo-EM facilities hinders research progress and training.

Purpose of the Study:

  • To present the successful user-managed operation of a 100 keV cryo-EM within a structural biology laboratory.
  • To detail the practical aspects of installing, maintaining, and operating a cost-effective cryo-EM system.
  • To demonstrate the feasibility of independent, high-quality cryo-EM data collection and processing outside core facilities.

Main Methods:

  • Installation and daily maintenance of a 100 keV electron microscope.
  • Integrated workflow encompassing grid screening, data collection, and data processing.
  • Utilized Ceta CMOS camera for low-resolution and Falcon C direct detector for high-resolution reconstructions.

Main Results:

  • Demonstrated routine high-quality low-resolution reconstructions and high-resolution reconstructions suitable for atomic model building.
  • Showcased a complete workflow using virus surface glycoproteins as case studies.
  • Achieved proficiency for beginners in independent microscope operation within one month of regular use and training.

Conclusions:

  • User-managed 100 keV cryo-EM enables integrated structural biology research, bridging protein production to structural determination.
  • This model provides an accessible training platform, fostering broader expertise in cryo-EM techniques.
  • Represents the first successful demonstration of a modern research group independently managing both cryo-EM operations and leveraging its capabilities for structural biology.