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Updated: Jan 7, 2026

Quantifying Microorganisms at Low Concentrations Using Digital Holographic Microscopy DHM
Published on: November 1, 2017
Subsurface microbiology and the pressing societal need to support future exploration
Cody S Sheik1,2, Andrew D Steen3, Brandi Kiel Reese4,5
1Large Lakes Observatory, University of Minnesota Duluth, Duluth, MN 55812, United States.
Subsurface microbiology is advancing to understand microbial functions and processes vital for climate change mitigation and waste storage. Increased funding and interdisciplinary collaboration are crucial for future subsurface research and sampling opportunities.
Area of Science:
- Geomicrobiology
- Subsurface Life Studies
- Environmental Microbiology
Background:
- Subsurface microbiology is shifting focus from microbial identification to understanding their functional roles and the processes governing subsurface life.
- Microbial processes in subsurface environments are critical for addressing global challenges like climate change mitigation and radioactive waste storage.
- Limited funding and access to subsurface sampling sites pose significant challenges to advancing this field.
Purpose of the Study:
- To provide a perspective on the current state and future directions of subsurface microbiology.
- To highlight the importance of subsurface microbial processes for societal needs.
- To propose actionable strategies for advancing subsurface geomicrobiology research.
Main Methods:
- Review of the history and current status of subsurface science.
- Identification of key challenges in subsurface sampling and funding.
- Proposal of strategies for future research and collaboration.
Main Results:
- Subsurface microbiology is transitioning towards functional and process-oriented research.
- Subsurface microbial activities are essential for climate change mitigation and waste management solutions.
- Current research is hampered by limited funding and access to subsurface environments.
Conclusions:
- Continued engagement of early-career microbiologists in drilling projects is essential.
- Increased access to subsurface environments can be achieved through industry partnerships and microbiology-led drilling initiatives.
- Interdisciplinary collaboration, involving microbiologists in the early planning stages of drilling projects, is vital for progress.
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