Genetic insights and diagnostic challenges in inherited bone marrow failure syndromes: a comprehensive study from a

Syed Ibrahim Bukhari1, Fizza Akbar2, Salman Kirmani2

  • 1Department of Oncology, Aga Khan University, Karachi, Pakistan.

Expert Review of Hematology
|December 25, 2025
PubMed

Insights

Genetic testing accurately diagnosed inherited bone marrow failure syndromes (IBMFS) in 34% of pediatric patients, improving management and family counseling. This highlights the importance of genetic evaluation for bone marrow failure, especially in consanguineous populations.

Area of Science:

  • Hematology
  • Genetics
  • Pediatric Medicine

Background:

  • Inherited bone marrow failure syndromes (IBMFS) often present with overlapping symptoms, leading to misdiagnosis as idiopathic aplastic anemia (iAA).
  • Accurate diagnosis is crucial, particularly in populations with high rates of consanguinity.
  • Genetic testing plays a pivotal role in differentiating IBMFS from iAA and other conditions.

Purpose of the Study:

  • To evaluate the diagnostic yield and clinical impact of genetic testing in pediatric patients with suspected bone marrow failure.
  • To assess the utility of genetic testing in a consanguineous population.
  • To identify common genetic variants associated with IBMFS in the studied cohort.

Main Methods:

  • Retrospective analysis of 41 pediatric patients undergoing genetic evaluation for bone marrow failure.
  • Review of clinical features, initial diagnoses, and genetic testing results.
  • Assessment of diagnostic revisions and impact on patient management and family counseling.

Main Results:

  • Genetic testing identified pathogenic/likely pathogenic variants in 34% of patients, establishing a molecular diagnosis for IBMFS.
  • An additional 32% had variants of uncertain significance, with one later reclassified, confirming Noonan syndrome.
  • Initial diagnoses were revised to conditions such as Fanconi anemia, Congenital Amegakaryocytic Thrombocytopenia, Shwachman-Diamond syndrome, and Diamond-Blackfan anemia.
  • Commonly implicated genes included *MPL*, *FANCA*, and *DANJC21*.

Conclusions:

  • Genetic testing achieved a 34% diagnostic yield for IBMFS in this Pakistani cohort, consistent with global findings.
  • Molecular diagnosis enhanced precision, guided treatment, and facilitated family counseling.
  • High rates of variants of uncertain significance necessitate ongoing reclassification and multidisciplinary care approaches.
Abstract