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Assessing PDMS Biocompatibility in Microfluidic Applications: Toxicity and Survival Outcomes in C. elegans
Kin Gomez1, Kirill Efimenko1, Jan Genzer1
1Department of Chemical & Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA.
Biorxiv : the Preprint Server for Biology
|December 25, 2025
Summary
Polydimethylsiloxane (PDMS) components can be toxic, with effects varying by environment and organism history. This study reveals PDMS leachates are not universally harmless, impacting biomedical research assumptions.
Area of Science:
- Biomaterials Science
- Toxicology
- Developmental Biology
Background:
- Polydimethylsiloxane (PDMS) is widely used in microfluidics and biomedical research, often assumed to be biocompatible.
- PDMS network components, particularly uncrosslinked vinyl-terminated PDMS (v-PDMS) chains, can leach into aqueous environments.
Purpose of the Study:
- To systematically assess the organismal effects of PDMS network components and their leachates.
- To investigate the influence of environmental factors and physiological history on PDMS toxicity.
Main Methods:
- Utilized *Caenorhabditis elegans* as a whole-animal model to evaluate PDMS toxicity.
- Assessed the impact of varying media composition, specific ions (cholesterol, calcium, magnesium, trace metals), and parental starvation on v-PDMS toxicity.
- Employed a DAF-16::GFP reporter strain to examine stress responses and analyzed the effects of linear and cyclic siloxanes and the PDMS crosslinker TDSS.
Main Results:
- Uncrosslinked v-PDMS chains exhibit acute, environmentally-dependent toxicity, with higher mortality in minimal buffer compared to nutrient-rich medium.
- Cholesterol, calcium, and magnesium reduced v-PDMS lethality, while trace metals increased it; cholesterol modulated stress responses.
- Transgenerational stress memory (from starved parents) conferred full resistance to v-PDMS, and linear siloxanes caused toxicity, unlike cyclic siloxanes.
Conclusions:
- PDMS-derived components are not universally benign, and their toxicity is significantly influenced by environmental conditions, sterol levels, and organismal physiological history.
- The findings underscore the need for careful evaluation of PDMS formulations for biomedical applications.
- A framework is proposed for assessing polymer leachate toxicity in living organisms.

