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Updated: Jan 7, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
A new model for coordinating the functions of TIMELESS at the replication fork
Sameera Vipat1, Rohan Harolikar2, Karina Šapovalovaitė1,3
1Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, 12618, ESTONIA.
TIMELESS protein depletion causes S phase entry defects and impairs DNA replication fork progression. Its interaction with the replicative helicase is crucial for replication speed but not checkpoint activation.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- TIMELESS is a vital protein involved in DNA replication, DNA damage response, transcription, and circadian rhythms.
- Its precise roles at the replication fork and in DNA damage checkpoint activation are not fully understood.
- The canonical positioning of TIMELESS at the replication fork's leading edge suggests a key role in checkpoint signaling.
Purpose of the Study:
- To elucidate the specific functions of TIMELESS in DNA replication and checkpoint control.
- To investigate how TIMELESS coordinates its roles at the replication fork.
- To understand the mechanism of TIMELESS in DNA damage response.
Main Methods:
- Utilized an auxin-inducible degron system for TIMELESS depletion in cells.
- Employed proximity labeling experiments to study protein interactions.
- Assessed chromatin loading of Fork Protection Complex (FPC) components (CLASPIN and TIPIN).
Main Results:
- TIMELESS depletion led to S phase entry defects and reduced chromatin loading of CLASPIN and TIPIN.
- Fork Protection Complex (FPC) loading correlated with replicative helicase activation and required DNA synthesis.
- TIMELESS interaction with the replicative helicase impacted replication fork speed but not checkpoint activation.
Conclusions:
- TIMELESS is essential for S phase entry, replication fork progression, and FPC chromatin loading.
- Multiple TIMELESS molecules may exist per replication fork.
- A novel model is proposed for TIMELESS function in coordinating replication fork progression and checkpoint activation.
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