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Four-Dimensional CT Analysis Using Sequential 3D-3D Registration
Published on: November 23, 2019
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Transformer-based and CNN-based models for clinically effective 2D and 3D pelvic bone segmentation in CT imaging
Shabnam Jafarpoor Nesheli1, Maryam Sabet2, Abolfazl Koozari3
1Faculty of Engineering, University of Science and Culture, Tehran, Iran.
BMC Musculoskeletal Disorders
|December 25, 2025
Summary
Deep learning models accurately segment pelvic bones in trauma CT scans, outperforming previous benchmarks. This automated segmentation shows promise for clinical integration in trauma imaging.
Area of Science:
- Medical Imaging
- Artificial Intelligence
- Computational Anatomy
Background:
- Accurate segmentation of pelvic structures in trauma CT scans is challenging due to anatomical complexity and image variability.
- Automated segmentation methods are crucial for efficient and precise analysis of pelvic fractures in clinical settings.
Purpose of the Study:
- To systematically compare Convolutional Neural Network (CNN) and transformer-based architectures for automated pelvic bone segmentation.
- To evaluate 2D and 3D model performance using different encoder backbones on the PENGWIN MICCAI 2024 dataset.
- To identify optimal deep learning strategies for clinical trauma imaging of pelvic fractures.
Main Methods:
- Utilized CT data from 150 patients with pelvic fractures from the PENGWIN MICCAI 2024 challenge dataset.
- Implemented and compared U-Net, LinkNet (CNNs), and UNETR (transformer) architectures in 2D and 3D formats with VGG19 and ResNet50 backbones.
- Trained models using composite loss functions and evaluated performance with 5-fold cross-validation using Dice coefficient, IoU, accuracy, sensitivity, and specificity.
Main Results:
- U-Net with ResNet50 achieved the highest 2D segmentation performance (Dice 0.991, IoU 0.982).
- 3D U-Net with VGG19 demonstrated strong volumetric segmentation (Dice 0.9112).
- UNETR showed superior specificity (0.993) and fast inference (<1 min/case) but lower sensitivity (0.730) for complex fragments.
Conclusions:
- Deep learning models effectively segment pelvic fractures with high accuracy and computational efficiency.
- The presented models provide a strong foundation for clinical integration into automated trauma imaging systems.
- Further external validation and workflow assessment are recommended for clinical implementation.

