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Whole-Mount Visualization of Primary Cilia in the Developing Mouse Brain
Oscar Torres Gutierrez1, Xiaoliang Liu1, Xuecai Ge1,2
1Department of Molecular and Cell Biology, University of California, Merced, Merced, CA, USA.
Bio-Protocol
|December 26, 2025
Summary
A new whole-mount protocol allows intact visualization of primary cilia in developing mouse brains. This method overcomes limitations of traditional sectioning for studying neural progenitor signaling during development.
Area of Science:
- Neuroscience
- Developmental Biology
- Cell Biology
Background:
- Primary cilia are crucial organelles for brain development, acting as signaling hubs on neural progenitors at the ventricular surface.
- Existing methods like cryostat sectioning disrupt ciliary morphology and offer limited views.
Purpose of the Study:
- To adapt and optimize a whole-mount technique for visualizing primary cilia in embryonic and neonatal mouse brains.
- To enable robust and intact visualization of ciliary morphology during critical developmental stages.
Main Methods:
- Adaptation of the established whole-mount technique for delicate embryonic (E12-P3) mouse brain samples.
- Detailed step-by-step protocol for whole-mounting and immunostaining embryonic and neonatal cortices.
- Specific procedures for dissecting and visualizing cilia on the lateral and medial ganglionic eminences.
Main Results:
- Successful adaptation of the whole-mount method for visualizing primary cilia in developing mouse brains.
- Preservation of intact ciliary morphology at the ventricular surface of neural progenitors.
- Demonstration of visualization in both the developing cortex and ganglionic eminences.
Conclusions:
- The optimized whole-mount protocol provides a powerful tool for studying primary cilia in neural progenitors during brain development.
- This technique overcomes previous limitations, allowing for detailed analysis of ciliary structure and function.
- Enables direct visualization of cilia in key brain regions during embryonic and neonatal development.

