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Updated: Jan 7, 2026

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
Epigenomic landscape of nasopharyngeal carcinoma
Saleh Suleiman Silmi Almohammadin1,2, Rabiatul Basria S M N Mydin3,4, Rosle Bahar5
1Department of Biomedical Sciences, Advanced Medical and Dental Institute, Universiti Sains Malaysia, Kepala Batas, 13200, Pulau Pinang, Malaysia.
Abstract:
Epigenetic modifications act as crucial controllers of gene expression in nasopharyngeal carcinoma (NPC), with DNA hypermethylation of tumour suppressor genes and alterations in histone modification patterns playing a major role in oncogenesis. EBV-encoded proteins directly modulate host epigenetic machinery, promoting stable silencing of critical genes. Environmental exposures, such as nitrosamines and tobacco smoke, further influence epigenetic risk. Non-coding RNAs, especially miRNAs and lncRNAs, modulate epigenetic regulators and contribute to tumour behaviour. Several epigenetic markers show strong potential as non-invasive diagnostic and prognostic tools. Epigenetic drugs, such as HDAC and DNMT inhibitors, therapeutically show promise in reactivating silenced genes and sensitising tumours to conventional treatments. Epigenomic alterations offer profound insights into NPC pathogenesis and present valuable opportunities for early detection, risk assessment and targeted therapy. With the advances in epigenomic profiling technologies and increasing clinical validation, epigenetic biomarkers and therapeutics may become integral to precision oncology approaches in NPC. Continued interdisciplinary research is essential to fully harness these insights and translate them into improved outcomes for patients. This review presents an in-depth summary of the current understanding regarding epigenomic alterations in NPC, with a focus on their biological significance, diagnostic utility, and therapeutic potential in NPC initiation, progression and treatment.
Insights
Epigenetic changes in nasopharyngeal carcinoma (NPC) involve DNA methylation and histone alterations, impacting gene expression. These epigenetic alterations offer potential for early detection and targeted therapies in NPC treatment.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Epigenetic modifications, including DNA hypermethylation and histone alterations, are key drivers of nasopharyngeal carcinoma (NPC) oncogenesis.
- Epstein-Barr virus (EBV) proteins and environmental factors like nitrosamines and tobacco smoke influence NPC epigenetics.
- Non-coding RNAs (miRNAs, lncRNAs) also play a role in modulating epigenetic regulators and NPC progression.
Purpose of the Study:
- To review the biological significance of epigenomic alterations in NPC.
- To explore the diagnostic and prognostic utility of epigenetic markers in NPC.
- To summarize the therapeutic potential of epigenetic drugs in NPC treatment.
Main Methods:
- Review of current literature on epigenomic alterations in NPC.
- Analysis of the role of DNA methylation, histone modifications, and non-coding RNAs in NPC.
- Evaluation of epigenetic biomarkers and therapeutic strategies for NPC.
Main Results:
- Epigenomic alterations are central to NPC pathogenesis, affecting gene silencing and tumour behaviour.
- Epigenetic markers show promise as non-invasive tools for NPC diagnosis and prognosis.
- Epigenetic drugs (HDAC and DNMT inhibitors) demonstrate therapeutic potential by reactivating silenced genes and enhancing treatment sensitivity.
Conclusions:
- Epigenomic insights provide opportunities for early detection, risk assessment, and targeted NPC therapy.
- Epigenetic biomarkers and therapeutics are poised to become integral to precision oncology for NPC.
- Further interdisciplinary research is crucial to translate epigenomic findings into improved patient outcomes for NPC.
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