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How to Measure Cortical Folding from MR Images: a Step-by-Step Tutorial to Compute Local Gyrification Index
Published on: January 2, 2012
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Morphogenesis and morphometry of brain folding patterns across species
Sifan Yin1, Chunzi Liu1, Gary P T Choi2
1School of Engineering and Applied Sciences, Harvard University, Cambridge, United States.
Elife
|December 29, 2025
Summary
Brain folding, or cortical gyrification, is key to higher cognitive function. This study reveals that simple mechanical instability from differential growth explains brain folding patterns across species.
Area of Science:
- Neuroscience
- Developmental Biology
- Biophysics
Background:
- Cortical folding (gyrification) is a hallmark of mammalian brain evolution, linked to advanced cognitive abilities.
- The complex folding patterns of the mammalian cortex arise during early development, with variations across species suggesting underlying principles.
- Understanding the mechanisms of cortical folding is crucial for comprehending brain evolution and function.
Purpose of the Study:
- To investigate the biophysical mechanisms driving cortical folding across different mammalian species.
- To compare folding patterns generated through physical models, computational simulations, and in vivo observations.
- To determine if differential growth alone can explain the observed variations in cortical gyrification.
Main Methods:
- Construction of two-layer physical gel brain models that swell to mimic cortical expansion and folding.
- Development of a three-dimensional continuum model simulating cortical folding via differential growth in silico.
- Comparative geometric morphometric analysis of surface buckling patterns from in vivo, in vitro, and in silico models.
Main Results:
- Physical gel models successfully replicated in vivo cortical folding patterns observed in ferret, macaque, and human brains.
- Computational simulations demonstrated that differential growth is a sufficient mechanism to induce cortical folding.
- Variations in tangential growth rates and initial geometric configurations explained species-specific differences in cortical folding.
Conclusions:
- Cortical folding is a mechanical process primarily driven by differential growth and resulting instabilities.
- The diversity of mammalian cortical folding patterns can be explained by variations in growth dynamics and initial brain geometry.
- This study provides a unified mechanical framework for understanding cortical gyrification across species.

