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TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis
Published on: June 8, 2020
PDIM/PGL-deficient Mycobacterium marinum shows disrupted protein secretion measured with bottom-up label-free
Simon D Weaver1,2, Daniel D Hu1, Bradley S Jones2,3
1Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, USA.
Abstract:
We investigated the chemical and functional consequences of a Mycobacterium marinum strain deficient in phthiocerol dimycocerosate and phenolic glycolipid (PDIM/PGL) virulence lipids using quantitative proteomics. The significant dysregulation of 1,006 proteins and altered ESAT-6 System-1 export and virulence were measured. PDIM/PGL deficiency specifically decreased the export of proteins with low isoelectric points.
Insights
Mycobacterium marinum lacking phthiocerol dimycocerosate and phenolic glycolipid (PDIM/PGL) virulence lipids showed significant protein changes. This deficiency altered ESAT-6 System-1 export, impacting virulence and reducing export of low isoelectric point proteins.
Area of Science:
- Microbiology
- Proteomics
- Lipid biochemistry
Background:
- Mycobacterium marinum is an important model organism for studying mycobacterial pathogenesis.
- Phthiocerol dimycocerosate and phenolic glycolipid (PDIM/PGL) are key virulence lipids in many mycobacteria.
- The precise roles of PDIM/PGL in M. marinum virulence are not fully understood.
Purpose of the Study:
- To investigate the chemical and functional consequences of PDIM/PGL deficiency in M. marinum.
- To identify protein expression changes associated with PDIM/PGL absence using quantitative proteomics.
- To assess the impact of PDIM/PGL deficiency on ESAT-6 System-1 export and overall virulence.
Main Methods:
- Quantitative proteomics was employed to analyze protein expression profiles.
- A M. marinum strain deficient in PDIM/PGL synthesis was compared to a wild-type strain.
- Protein dysregulation, ESAT-6 System-1 export, and virulence were measured.
Main Results:
- A significant dysregulation of 1,006 proteins was observed in the PDIM/PGL-deficient strain.
- ESAT-6 System-1 export and virulence were significantly altered.
- PDIM/PGL deficiency specifically decreased the export of proteins with low isoelectric points.
Conclusions:
- PDIM/PGL lipids play a crucial role in regulating protein export and virulence in M. marinum.
- The absence of PDIM/PGL leads to widespread proteomic changes and affects specific protein secretion pathways.
- Understanding these lipid-protein interactions is vital for developing novel anti-mycobacterial strategies.
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