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Published on: December 15, 2011
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Urinary metabolome dynamics in 13C-labeled mice
Annelaure Damont1, Anaïs Legrand2, Kathleen Rousseau2
1Paris-Saclay University, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), MetaboHUB, F-91191, Gif sur Yvette, France. annelaure.damont@cea.fr.
Metabolomics : Official Journal of the Metabolomic Society
|December 30, 2025
Summary
Mice tolerated a whole-body carbon-13 (13C) labeled diet for six weeks, revealing variable 13C incorporation kinetics across metabolites. This study offers broad insights into mammalian metabolome dynamics using isotope tracing.
Area of Science:
- Metabolomics
- Systems Biology
- Isotope Tracing
Background:
- Metabolic flux analysis typically uses specific labeled precursors and LC-HRMS.
- Targeted approaches limit the scope of metabolic pathway investigation.
Purpose of the Study:
- To investigate whole metabolome dynamics using a novel approach of a fully 13C-enriched diet in mice.
- To assess the feasibility and outcomes of long-term whole-body isotope labeling.
Main Methods:
- Mice were fed a diet fully enriched in 13C for six weeks.
- Urine samples were collected daily and analyzed using LC-HRMS and isotope tracing.
- Comparative analysis was performed against control mice fed an unenriched diet.
Main Results:
- Mice tolerated the 13C-enriched diet, showing normal growth.
- LC-HRMS identified 238 metabolites, with 13C labeling profiles monitored over 39 days.
- Urine labeling reached >90% 13C after 22 days, but incorporation kinetics varied significantly between metabolites.
Conclusions:
- A diet fully labeled with 13C is well-tolerated by mice over six weeks.
- This whole-body labeling approach reveals dynamic metabolome information in mammals via urine analysis.
- The study provides comprehensive metabolic pathway insights, surpassing limitations of targeted fluxomic studies.

