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Updated: Jan 7, 2026

T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
Published on: January 12, 2021
Circulating T-cell receptor repertoire and clinicopathological correlations in breast cancer patients: immune
Ling-Ming Tseng1,2,3, Chi-Cheng Huang1,3,4, Ji-Lin Chen1,2
1Comprehensive Breast Health Center, Taipei Veterans General Hospital, Taipei, Taiwan.
Abstract:
Sequencing of the T-cell receptor (TCR) repertoire can reflect immune status and monitor treatment responses. Here, we aimed to characterize the TCRβ repertoire and its correlation with clinical and prognostic significance in breast cancer. A total of 856 peripheral blood samples were collected from female breast cancer patients for TCR sequencing. At baseline, TCR clonality was elevated in patients with stage IV disease compared with earlier-stage breast cancer, and higher clonality within the stage IV cohort was associated with poorer overall survival. Compared with the luminal A subtype, luminal B2 breast cancer exhibited lower baseline TCR Shannon diversity. Following both adjuvant and neoadjuvant chemotherapy, we observed increased TCR convergence and clonality accompanied by reduced Shannon diversity. Remarkably, these repertoire changes were most evident in patients treated with taxane or anthracycline plus taxane regimens in the adjuvant setting, and with anthracycline plus taxane or platinum-based regimens in the neoadjuvant setting. Notably, trastuzumab was associated with increased clonality and reduced diversity in HER2-enriched tumors, but not in Luminal B2. Lower TCR richness in post-treatment blood samples was associated with patients achieving pathologic complete response in the neoadjuvant setting. This study provides comprehensive circulating TCR repertoire metric profiles across the heterogeneous population of breast cancer patients.
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