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A Comparative Analysis of CNN Architectures, Fusion Strategies, and Explainable AI for Fine-Grained Macrofungi
Mustafa Sevindik1, Aras Fahrettin Korkmaz2, Fatih Ekinci3
1Department of Biology, Faculty of Engineering and Natural Sciences, Osmaniye Korkut Ata University, Osmaniye 80000, Türkiye.
Biology
|December 30, 2025
Summary
Deep learning accurately identifies similar mushroom species. Advanced models like Dual Path Network (DPN) show high performance, aiding fungal taxonomy and biodiversity monitoring.
Area of Science:
- Mycology
- Computational Biology
- Artificial Intelligence
Background:
- Accurate identification of morphologically similar macrofungi is challenging for fungal taxonomy and biodiversity monitoring.
- Existing methods struggle with fine-grained visual classification in fungi.
- Automated identification tools are needed to support taxonomic and ecological studies.
Purpose of the Study:
- To develop and evaluate a deep learning framework for automated classification of seven morphologically similar coprinoid macrofungi species.
- To compare the performance of various state-of-the-art convolutional neural networks (CNNs) and novel fusion models.
- To utilize Explainable AI (XAI) techniques to understand model decision-making processes.
Main Methods:
- A curated dataset of 1692 high-resolution macrofungi images was utilized.
- Ten state-of-the-art CNNs and three novel fusion models were evaluated.
- Performance metrics included accuracy, Matthews Correlation Coefficient (MCC), and Area Under the Curve (AUC).
- Explainable AI (XAI) methods like Grad-CAM and Integrated Gradients were employed.
Main Results:
- The Dual Path Network (DPN) achieved the highest accuracy (89.35%) as a single model.
- Feature-level fusion of Xception and DPN demonstrated competitive performance (88.89% accuracy).
- Lighter models (LCNet, MixNet) exhibited lower accuracy (72.05%).
- XAI confirmed models focused on key morphological features like caps and gills.
Conclusions:
- Deep learning models, especially deeper architectures and fusion models, are effective for fine-grained fungal classification.
- The developed framework offers a robust and interpretable tool for automated fungal identification.
- This approach has significant implications for advancing mycology, biodiversity research, and taxonomy.