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Deep Learning-Assisted Detection and Classification of Thymoma Tumors in CT Scans
Murat Kılıç1, Merve Bıyıklı1, Salih Taha Alperen Özçelik2
1Department of Thoracic Surgery, Faculty of Medicine, Inonu University, Malatya 44210, Türkiye.
Diagnostics (Basel, Switzerland)
|December 30, 2025
Summary
A new deep learning model improves thymoma diagnosis by combining VGG16 and MLP-Mixer for accurate detection and classification of benign versus malignant tumors using CT scans.
Area of Science:
- Medical Imaging
- Artificial Intelligence
- Oncology
Background:
- Thymoma, a rare thymus gland neoplasm, presents diagnostic challenges on CT scans due to subtle morphology.
- Accurate differentiation from other mediastinal pathologies and subtype classification (benign vs. malignant) is crucial.
Purpose of the Study:
- To develop and evaluate a deep learning (DL) model for enhanced thymoma detection and classification.
- To improve diagnostic accuracy for distinguishing thymoma from healthy cases and classifying thymoma subtypes.
Main Methods:
- A hybrid DL model integrating VGG16 for feature extraction and MLP-Mixer for feature enhancement was developed.
- Customized image preprocessing and post-processing techniques were applied.
- Performance was benchmarked against state-of-the-art DL models using accuracy, F1 score, recall, and precision.
Main Results:
- The proposed model achieved 97.15% accuracy and 80.99% F1 score for thymoma vs. healthy classification.
- For benign vs. malignant thymoma classification, the model reached 79.20% accuracy and 78.51% F1 score.
- The model outperformed all baseline methods in both classification tasks.
Conclusions:
- The combined VGG16 and MLP-Mixer approach offers superior and balanced performance for thymoma diagnosis.
- This DL model shows significant potential for clinical decision support in identifying and classifying thymoma.

