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A Machine Learning Model Based on First-Trimester Lipidomic Signatures for Predicting Metabolic Pregnancy
Alisa Tokareva1, Natalia A Frankevich1, Vitaliy Chagovets1
1V.I. Kulakov National Medical Research Center for Obstetrics, Gynecology and Perinatology, Ministry of Healthcare of Russian Federation, Moscow 117997, Russia.
International Journal of Molecular Sciences
|December 30, 2025
Summary
Early pregnancy screening using first-trimester lipidomics can predict gestational diabetes mellitus (GDM) and macrosomia. Machine learning models identify high-risk pregnancies, enabling timely interventions for better maternal and neonatal outcomes.
Area of Science:
- Biochemistry
- Genomics and Proteomics
- Computational Biology
Background:
- Gestational diabetes mellitus (GDM) and macrosomia significantly impact maternal and neonatal health.
- Early molecular dysregulations precede clinical manifestation of these pregnancy complications.
- Predictive biomarkers are needed for timely intervention and personalized pregnancy management.
Purpose of the Study:
- To develop early predictive models for GDM and macrosomia using first-trimester serum lipidomic signatures.
- To identify novel lipid biomarkers associated with GDM and macrosomia.
- To evaluate the efficacy of machine learning models in predicting these pregnancy complications.
Main Methods:
- A case-control study involving 119 women during first-trimester screening.
- Serum lipidomic profiling using shotgun mass spectrometry.
- Machine learning models (Random Forest, XGBoost) with 10-fold cross-validation after Shapley value-based feature selection.
Main Results:
- Identified potential GDM biomarkers: elevated triacylglycerol (TG) 55:7, decreased 13-Docosenamide, plasmenyl-phosphatidylcholine (PC P)-36:2, and phosphatidylcholine (PC) 42:7.
- Identified potential macrosomia biomarkers: phosphatidylglycerol (PG) (i-, a- 29:0), 4-Hydroxybutyric acid, and Pantothenol.
- GDM prediction model achieved 87% sensitivity and 89% specificity; macrosomia model achieved 87% sensitivity and 93% specificity.
Conclusions:
- First-trimester serum lipidomics combined with clinical data and machine learning can accurately predict GDM and macrosomia risk.
- This integrated approach shows promise for a clinical tool for early intervention and personalized pregnancy care.
- Early identification of high-risk pregnancies facilitates timely management to improve maternal and neonatal outcomes.

