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Updated: Jul 4, 2026

Alveolar Macrophage Phagocytosis and Bacteria Clearance in Mice
Published on: March 2, 2019
Gut microbiome-derived propionate reprograms alveolar macrophages metabolically and regulates lung injury responses
Daisuke Maruyama1, Xiaoli Tian1, Thien N M Doan1
1Department of Anesthesia and Perioperative Care, University of California San Francisco and San Francisco General Hospital, San Francisco, CA, USA.
Abstract:
Responses to lung injury can vary between individuals with the diet and gut microbiome representing two underappreciated sources for this variability. The gut microbiome can influence lung injury outcomes through the gut‒lung axis, but exactly how diet and its effects on the microbiota are involved remains unclear. We hypothesized that dietary fiber interventions would favor the presence of short-chain fatty acid (SCFA)-producing fermentative bacteria presence in the gut microbiome, thereby influencing the resting lung immunometabolic tone as well as influencing downstream responses to lung injury and infection. To test this hypothesis, we fed mice fiber-rich (FR) and fiber-free (FF) diets, and observed changes in the steady-state transcriptional programming of alveolar macrophages (AM). Next, we examined the effects of the FR and FF diets on murine responses to sterile and infectious lung injury in vivo while simultaneously profiling the gut microbiota and SCFA levels transmitted along the gut‒lung axis. Finally, we validated our in vivo observations with mechanistic studies of the metabolic, signaling, and chromatin-modifying effects of specific SCFAs on lung AM ex vivo and in vitro. Overall, our fiber-rich diet reprogrammed AMs and attenuated lung inflammation after sterile injury while exacerbating lung infection. This effect of FR diets could be transferred to germ-free (GF) mice by fecal microbiome transplantation (FMT) and depended on the ability of the microbiota to produce propionate. Mechanistically, SCFAs altered the metabolic programming of AMs and lung tissue ex vivo without a clear role for free fatty acid receptors (FFAR) or chromatin remodeling. These findings demonstrate that the gut‒lung axis can regulate resting lung metabolic tone through dietary fiber intake and the enrichment of SCFA-producing gut bacteria, as well as influence sterile and non-sterile lung injury responses. These results provide evidence to support the development of therapeutic dietary interventions to preserve or enhance specific aspects of host pulmonary immunity.
Insights
Dietary fiber intake impacts the gut microbiome, influencing lung immunity. A fiber-rich diet reprogrammed lung cells, reducing sterile injury but worsening infection, highlighting the gut-lung axis in pulmonary health.
Area of Science:
- Immunology
- Microbiology
- Nutrition Science
Background:
- Individual responses to lung injury vary, with diet and gut microbiome playing underappreciated roles.
- The gut-lung axis mediates communication between the gut microbiota and lung immunity, but dietary influences remain unclear.
Purpose of the Study:
- To investigate how dietary fiber affects the gut microbiome and influences lung immunometabolic tone and responses to lung injury.
- To test the hypothesis that dietary fiber promotes short-chain fatty acid (SCFA)-producing bacteria, modulating lung immunity.
Main Methods:
- Mice were fed fiber-rich (FR) and fiber-free (FF) diets, with subsequent analysis of alveolar macrophage (AM) transcriptional programming.
- Murine responses to sterile and infectious lung injury were assessed in vivo, alongside gut microbiota and SCFA profiling.
- Mechanistic studies explored the ex vivo and in vitro effects of SCFAs on lung AMs.
Main Results:
- A fiber-rich diet reprogrammed AMs, attenuating sterile lung injury but exacerbating infectious injury.
- These diet-induced effects were transferable via fecal microbiome transplantation (FMT) and dependent on microbial propionate production.
- SCFAs altered metabolic programming of lung cells ex vivo, independent of FFARs or chromatin remodeling.
Conclusions:
- Dietary fiber intake and SCFA-producing gut bacteria modulate lung metabolic tone via the gut-lung axis.
- Dietary interventions hold potential for preserving or enhancing host pulmonary immunity against lung injury.
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