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Combining Hyperspectral Imaging with Ensemble Learning for Estimating Rapeseed Chlorophyll Content Under Different
Ying Jin1, Yaoqi Peng2, Haoyan Song1
1College of Advanced Agricultural Sciences, Zhejiang A&F University, Linan, Hangzhou 311300, China.
Plants (Basel, Switzerland)
|December 31, 2025
Summary
Hyperspectral imaging combined with ensemble learning accurately estimates chlorophyll content (SPAD) in rapeseed seedlings. This method offers effective early stress monitoring for crops facing waterlogging.
Area of Science:
- Agricultural Science
- Plant Physiology
- Remote Sensing
Background:
- Chlorophyll content is vital for photosynthetic capacity and crop health.
- Soil-Plant Analysis Development (SPAD) meters offer rapid, non-destructive chlorophyll estimation.
- Hyperspectral imaging (HSI) captures detailed spectral data for advanced crop analysis.
Purpose of the Study:
- To assess the efficacy of HSI integrated with ensemble learning (EL) for estimating rapeseed seedling SPAD values.
- To evaluate model performance under varying waterlogging durations and across different rapeseed cultivars.
- To establish a robust method for early stress detection in crops.
Main Methods:
- Collected hyperspectral images and SPAD values from six rapeseed cultivars subjected to 0, 2, 4, and 6 days of waterlogging.
- Utilized mutual information for selecting the top 30 spectral and vegetation index features.
- Developed an EL model using five first-layer learners (PLS, SVM, RF, Ridge, Elastic Net) and a second-layer multiple linear regression.
Main Results:
- The EL model demonstrated superior stability and prediction accuracy over single models across diverse datasets.
- Model accuracy improved with increased waterlogging duration, reaching an R² of 0.79 and RMSE of 3.27 at 6 days.
- The developed model showed strong predictive capability for estimating SPAD values.
Conclusions:
- Combining ensemble learning with hyperspectral imaging provides a stable and accurate method for estimating chlorophyll content.
- This integrated approach offers a powerful tool for early stress monitoring in agricultural settings.
- The study highlights the potential of advanced spectral analysis for high-throughput phenotyping and crop management.

