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Updated: Jun 12, 2026

Time-resolved ElectroSpray Ionization Hydrogen-deuterium Exchange Mass Spectrometry for Studying Protein Structure and Dynamics
Published on: April 17, 2017
Mass spectrometry footprinting reveals how kinetic stabilizers counteract transthyretin dynamics altered by
Francisca Pinheiro1, Ravi Kant2, Saketh Chemuru2
1Institut de Biotecnologia i Biomedicina and Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Barcelona 08193, Spain.
Abstract:
The aggregation of transthyretin (TTR) results in life-threatening transthyretin amyloidosis. Familial forms of the disease arise from point mutations that destabilize the TTR tetramer, leading to its dissociation and/or monomer unfolding and subsequent formation of amyloid fibrils. Small molecules that kinetically stabilize the native tetramer effectively inhibit this aggregation. Although over 300 X-ray crystal structures of TTR have been determined, these data refer to a static structure and do not capture the conformational effects of mutations and ligand binding. Here, we demonstrate that hydrogen-deuterium exchange (HDX) and fast photochemical oxidation of proteins (FPOP) coupled with mass spectrometry (MS) offer critical insights into the conformational dynamics associated with TTR amyloidogenic mutations and the binding of kinetic stabilizers. The results indicate that the design of TTR binders should consider the specific conformational traits of each TTR pathogenic variant. We propose that incorporating MS-based techniques into TTR drug discovery will expedite the development of effective pathology-specific aggregation inhibitors.
Insights
Transthyretin amyloidosis is a fatal disease caused by TTR aggregation. New mass spectrometry techniques reveal protein dynamics, aiding the development of targeted therapies for this condition.
Area of Science:
- Biochemistry
- Structural Biology
- Drug Discovery
Background:
- Transthyretin (TTR) aggregation causes amyloidosis.
- Familial TTR amyloidosis stems from mutations destabilizing the TTR tetramer.
- Kinetic stabilizers are small molecules that inhibit TTR aggregation.
Purpose of the Study:
- To investigate the conformational dynamics of TTR.
- To understand the impact of mutations and ligand binding on TTR structure.
- To explore MS-based techniques for TTR drug discovery.
Main Methods:
- Hydrogen-deuterium exchange (HDX) coupled with mass spectrometry (MS).
- Fast photochemical oxidation of proteins (FPOP) coupled with mass spectrometry (MS).
Main Results:
- HDX-MS and FPOP-MS provide insights into TTR conformational dynamics.
- These techniques reveal effects of pathogenic mutations and kinetic stabilizer binding.
- TTR binders should be designed considering specific variant conformational traits.
Conclusions:
- MS-based techniques offer critical insights into TTR dynamics.
- Understanding conformational dynamics is key for developing effective TTR aggregation inhibitors.
- Incorporating MS methods can expedite the development of pathology-specific TTR drugs.
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