Unsupervised anomaly detection in brain MRI via disentangled anatomy learning
Tao Yang1, Xiuying Wang2, Hao Liu1
1School of Automation and Intelligent Sensing, Shanghai Jiao Tong University, Shanghai, China.
Medical Image Analysis
|January 1, 2026
Summary
This study introduces a novel framework for brain MRI lesion detection, improving generalizability and performance by decoupling imaging data and restoring anatomical details. The new method significantly enhances detection accuracy for various brain anomalies.
Area of Science:
- Medical Imaging
- Artificial Intelligence
- Neuroscience
Background:
- Brain MRI lesion detection is crucial but challenging due to lesion diversity and imaging variability.
- Current unsupervised methods struggle with generalizability across different MRI modalities and centers.
- Existing models are limited by abnormal residuals in reconstructed pseudo-healthy images (PHIs).
Purpose of the Study:
- To develop a novel unsupervised framework for robust brain MRI lesion detection.
- To enhance the generalizability and performance of anomaly detection in brain MRIs.
- To address limitations of current methods, including restricted generalizability and performance constraints.
Main Methods:
- Proposed a new PHI reconstruction framework with two novel modules: disentangled representation and edge-to-image restoration.
- The disentangled representation module separates imaging information from anatomical images for improved generalizability.
- The edge-to-image restoration module reconstructs high-quality PHIs by restoring anatomical details from edge information.
Main Results:
- The proposed method achieved absolute improvements of +18.32% in average precision and +13.64% in Dice similarity coefficient.
- Outperformed 17 state-of-the-art methods across nine public datasets (4,443 patients' MRIs).
- Demonstrated superior performance in multi-modality and multi-center brain MRI lesion detection.
Conclusions:
- The novel framework significantly improves unsupervised brain MRI lesion detection.
- The method offers enhanced generalizability and performance compared to existing techniques.
- This approach holds promise for more accurate and reliable clinical diagnosis of brain anomalies.
Keywords:
Brain anomaliesDisentangled representationMagnetic resonance imaging (MRI)Reconstruction modelUnsupervised anomaly detection

