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Published on: May 8, 2015
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Blinking-Based Identification of Single Dye Molecules in Ink.
Alisha J Khodabocus1, Walker T Knapp1, Benjamin T Steinman1
1Department of Chemistry, William & Mary, PO Box 8795, Williamsburg, Virginia 23187-8795, United States.
Analytical Chemistry
|January 2, 2026
Summary
This study introduces a novel blinking-based method for identifying single fluorescent dye molecules in cultural heritage materials. This ultrasensitive technique offers exclusive identification of rhodamine dyes without invasive substrates.
Area of Science:
- Analytical Chemistry
- Heritage Science
- Materials Science
Background:
- Identifying fluorescent dyes in cultural heritage is difficult due to fading, sample scarcity, and complexity.
- Existing methods like surface-enhanced Raman scattering (SERS) can be invasive or lack single-molecule sensitivity.
Purpose of the Study:
- To develop a minimally invasive, ultrasensitive method for identifying single fluorescent dye molecules.
- To provide exclusive identification of structurally similar rhodamine dyes in inks.
Main Methods:
- Utilized widefield fluorescence microscopy and blinking analysis to detect intrinsic fluorescence intermittency.
- Applied change point detection and multinomial logistic regression to define identification factors.
- Validated results with bulk surface-enhanced Raman scattering (SERS) measurements.
Main Results:
- Successfully identified single rhodamine dye molecules based on their unique blinking patterns.
- Developed four quantitative determination factors for exclusive identification of three rhodamine dyes.
- Confirmed the presence of rhodamine B in commercial ballpoint ink samples.
Conclusions:
- Blinking-based dye identification offers single-molecule sensitivity and exclusive results without plasmonic substrates.
- This method is a powerful, minimally invasive tool for characterizing artists' materials.
- Opens new avenues for conservation and heritage science research.

