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Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq
Published on: November 13, 2017
Myeloid-driven immunosuppression in head and neck cancer: single-cell ATAC/RNA and spatial transcriptomic
Rui Luo1,2, Jianzheng Yang3, Zimeng Cao4
1Department of Otorhinolaryngology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Abstract:
Head and neck squamous cell carcinoma (HNSCC) remains a prevalent epithelial malignancy. Immune-checkpoint inhibitors have reshaped first-line therapy for recurrent/metastatic disease; yet durable benefit is confined to a subset, reflecting myeloid-centric mechanisms-SPP1+ TAM barriers, cDC1/IL-12 insufficiency, and CXCL8-CXCR1/2-driven neutrophil trafficking-distinct from, and complementary to, classical lymphoid exhaustion. In this review we summarize advances from single-cell RNA and ATAC profiling and spatial transcriptomics that resolve macrophage, dendritic-cell and neutrophil programs, and appraise translational opportunities spanning myeloid reprogramming, innate-adaptive combinations and spatial biomarkers. We also discuss enduring challenges-including HPV-status heterogeneity, limited assay standardization and a scarcity of predictive metrics-that temper implementation. By integrating myeloid-informed readouts (e.g., SPP1-TAM burden, cDC1 competency, serum IL-8) with PD-1-based regimens, EGFR-directed antibodies and myeloid checkpoints (CD47-SIRPα, PI3Kγ, CXCR1/2), emerging strategies aim to restore antigen presentation, improve lymphocyte trafficking and remodel tumor-stroma interfaces. Our synthesis provides an appraisal of the evolving landscape of myeloid-informed precision immuno-oncology in HNSCC and outlines pragmatic standards and avenues for clinical translation. We hope these insights will assist researchers and clinicians as they endeavor to implement more effective, individualized regimens.
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