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Related Experiment Video

Updated: Jan 7, 2026

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Predicting isocitrate dehydrogenase status in glioma using hierarchical attention-based deep 3D multiple instance

Qinqin Xie1,2, Yongheng Sun3, Yuxia Liang1

  • 1PET-CT Center, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

Frontiers in Oncology
|January 5, 2026
PubMed
Summary

This study introduces a novel Hierarchical Attention-Based Multiple Instance Learning (HAB-MIL) framework for predicting isocitrate dehydrogenase (IDH) status in gliomas using MRI scans. The HAB-MIL model accurately classifies IDH status, reducing the need for invasive procedures.

Keywords:
IDHMultiple Instance Learningdynamic gated attentiongliomalocation encoding

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Area of Science:

  • Neuro-oncology
  • Medical Imaging Analysis
  • Machine Learning in Medicine

Background:

  • Isocitrate dehydrogenase (IDH) status is a critical prognostic biomarker for central nervous system tumors, influencing diagnosis and treatment.
  • Current methods for determining IDH status in gliomas are invasive, relying on surgical biopsies.
  • The 2021 WHO classification highlights the importance of IDH status in glioma management.

Purpose of the Study:

  • To develop a non-invasive method for predicting IDH status in gliomas.
  • To evaluate the efficacy of a novel Hierarchical Attention-Based Multiple Instance Learning (HAB-MIL) framework using preoperative MRI.
  • To reduce the reliance on invasive surgical procedures for IDH status determination.

Main Methods:

  • A retrospective cohort of 345 glioma patients from Xi'an Jiaotong University and 495 from the TCIA dataset were included.
  • A Hierarchical Attention-Based Multiple Instance Learning (HAB-MIL) framework was developed, incorporating positional encoding for 3D lesion representation.
  • Model performance was assessed using five-fold cross-validation, ROC curves, AUC, sensitivity, and specificity.

Main Results:

  • The HAB-MIL framework achieved high performance with AUCs of 0.917 (TCIA) and 0.892 (Xi'an Jiaotong University).
  • The model's performance is comparable to state-of-the-art methods on the TCIA dataset.
  • Multiple instance learning demonstrates significant potential for accurate IDH prediction in gliomas.

Conclusions:

  • The HAB-MIL framework enables IDH classification using conventional preoperative MRI, eliminating the need for pixel-level annotations.
  • This approach significantly reduces the annotation burden for clinicians.
  • The study presents a promising non-invasive tool for glioma IDH status assessment.