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Updated: Jan 13, 2026

A Within-Subject Experimental Design using an Object Location Task in Rats
Published on: May 6, 2021
Design and analysis of individually randomized multiple baseline factorial trials
Yongdong Ouyang1,2, Maria Laura Avila3,4, Anna Heath3,5,6
1Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Elm and Clarton St, Buffalo, NY, 14263, USA. yongdong.ouyang@roswellpark.org.
A new individually randomized multiple baseline factorial design (MBFD) enables effective evaluation of multiple behavioral interventions in rare diseases. This design requires fewer participants and enhances statistical power and internal validity for intervention research.
Area of Science:
- Behavioral Science
- Rare Disease Research
- Clinical Trial Design
Background:
- Assessing behavioral interventions in rare diseases is difficult due to small sample sizes and ethical constraints.
- The standard multiple baseline design (MBD) is limited to evaluating single interventions.
- Factorial designs are often infeasible in rare diseases due to participant limitations.
Purpose of the Study:
- To propose and describe the individually randomized multiple baseline factorial design (MBFD) for evaluating multiple interventions in rare diseases.
- To clarify estimands and introduce statistical models for analyzing MBFD data.
- To assess the statistical performance of MBFD through simulations.
Main Methods:
- Description of the standard MBFD characteristics.
- Introduction of three statistical models (LMM, GEE) for data analysis.
- Simulation studies to compare model biases, sizes, and power.
Main Results:
- The MBFD requires fewer participants than standard factorial designs while maintaining statistical power.
- Generalized estimating equations (GEE) are recommended over linear mixed effect models (LMM) to address potential random effect misspecifications.
- Small sample corrections (e.g., Mancl and DeRouen variance estimator) are suggested for sample sizes under 120.
Conclusions:
- The MBFD is a viable and statistically robust design for rare disease intervention research.
- GEE with small sample corrections offers reliable analysis for MBFD data.
- This design enhances the ability to evaluate multiple interventions and their combinations in rare disease populations.
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