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Updated: Jan 13, 2026

High-throughput Screening for Broad-spectrum Chemical Inhibitors of RNA Viruses
Published on: May 5, 2014
An innovative approach for anti-respiratory syncytial virus compound discovery from plant extracts, combining
Paola Haemmerli1, Mathieu Hubert2, Arnaud Gaudry1
1Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU, Geneva 1211, Switzerland; School of Pharmaceutical Sciences, University of Geneva, CMU, Geneva 1211, Switzerland.
Abstract:
The respiratory syncytial virus (RSV) has been identified as a major causative agent of bronchiolitis in children; nevertheless, available therapeutic options remain limited. Natural products (NPs) have been valued in the field of drug discovery and hold great promise for addressing this gap. However, there is a lack of methodologies that combine high-throughput screening (HTS) of natural extracts (NEs) with parallel metabolomic profiling to target the isolation of potential antivirals. This study presents an antiviral discovery approach that integrates HTS of 192 NEs against RSV in human lung adenocarcinoma cells (A549) with their systematic metabolite profiling. To optimize the identification of compounds with antiviral activity, we developed a scoring system, referred to as the "bioscore". This score correlates the antiviral activity of each NE with the normalized intensities of its constituents across the 192 NEs. Using this approach, triterpenes, including betulinic acid (BA), were frequently identified in active NEs, contributing to a high hit rate of 38 %. After isolating BA from Pilea plataniflora, we confirmed its antiviral activity in A549 cells, as well as in physiologically relevant models such as airway organoids and human airway epithelia cultured at the air-liquid interface. We further investigated its mechanism of action and found an effect at the early stage of viral replication. Protoapigenone, a species-specific flavonoid from this set of 192 NEs, was also identified as a potential antiviral NP, though limited by its cytotoxicity. This integrative workflow enables scalable antiviral screening of NEs by directly linking metabolomics with bioactivity through bioscore-driven prioritization.

