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Updated: Jan 13, 2026

Comparative Proteomic Analysis of Whole Kidney, Medulla, and Cortical Tubules in Diabetic Pathogenesis of Kidney Injury in Mice
Published on: May 2, 2025
Aging kidney is associated with metabolic rewiring and epigenetic reprogramming
Pragney Deme1, Rhea Bhargava2, Heddwen L Brooks1
1Department of Physiology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.
Aging kidneys show altered metabolism and increased epimetabolites, impacting renal physiology. These changes are sex-specific, revealing a complex interplay between aging, metabolism, and epigenetics in kidney function.
Area of Science:
- Renal Physiology
- Metabolomics
- Epigenetics
- Aging Biology
Background:
- Renal aging involves complex metabolic and epigenetic changes.
- Sex-specific differences in aging renal disease are known but poorly understood.
- The intersection of renal metabolism, epigenetics, and aging requires further investigation.
Purpose of the Study:
- To investigate age- and sex-specific alterations in renal metabolic pathways.
- To examine the impact of aging on metabolite cofactors of epigenetic modifiers in the kidney.
- To elucidate the interplay between renal metabolomics and epigenetics during aging.
Main Methods:
- Kidney homogenates from young and aged sex-matched mice were analyzed using High-Performance Liquid Chromatography-Triple Time-of-Flight (HPLC-TripleTOF) liquid chromatography-mass spectrometry (LC-MS).
- Metabolite levels, including epimetabolites and epigenetic cofactor metabolites, were quantified.
- Sex-specific metabolic pathway analyses were performed.
Main Results:
- Aging kidneys exhibited increased glycolysis, reduced fatty acid oxidation, mitochondrial dysfunction, oxidative stress, and impaired waste clearance.
- Elevated levels of methylated and acetylated intermediate metabolites (epimetabolites) were observed in aged mice.
- Key epigenetic cofactor metabolites (acetyl-CoA, FAD, α-ketoglutarate) showed age-related alterations.
- Aged female mice displayed enhanced amino acid/tryptophan metabolism and reduced ammonia clearance compared to aged males.
Conclusions:
- Aging induces significant metabolic reprogramming in the kidney, characterized by increased epimetabolites.
- Age-related metabolic changes in the kidney are sex-specific.
- These findings highlight a crucial link between renal metabolomics, epigenetics, and sex-specific aging processes.
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