Loss of KDM6A-mediated genomic instability and metabolic reprogramming regulates response to therapeutic

Pratishtha Singh1, Ranit D'Rozario1, Bidisha Chakraborty1

  • 1Department of Immunology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

Nature Communications
|January 7, 2026
PubMed

Insights

Loss-of-function mutations in KDM6A impact bladder cancer treatment. KDM6A deficiency causes cisplatin resistance but improves anti-PD-1 therapy outcomes, guiding precision medicine.

Area of Science:

  • Oncology
  • Epigenetics
  • Cancer Immunology

Background:

  • Epigenetic regulator mutations are frequent in bladder cancer.
  • The role of these mutations in therapeutic response is largely unknown.
  • KDM6A mutations occur in ~26% of advanced bladder cancers.

Purpose of the Study:

  • To investigate the impact of KDM6A mutations on responses to cisplatin chemotherapy and anti-PD-1 therapy in bladder cancer.
  • To elucidate the molecular mechanisms underlying KDM6A's influence on therapeutic resistance and sensitivity.

Main Methods:

  • Utilized CRISPR-Cas9 gene editing to create KDM6A-deficient murine and human bladder cancer models.
  • Analyzed the formation of extrachromosomal circular DNA (eccDNA) and its role in chemoresistance.
  • Assessed DNA repair pathways and tumor metabolic reprogramming, including glycolysis and histone lactylation in T cells.

Main Results:

  • KDM6A loss-of-function mutations are linked to poor survival with cisplatin but improved outcomes with anti-PD-1 therapy.
  • KDM6A deficiency promotes cisplatin resistance via eccDNA formation and impaired DNA repair.
  • KDM6A loss alters tumor metabolism, reducing histone lactylation in regulatory T cells and suppressing anti-tumor immunity.

Conclusions:

  • KDM6A mutations are critical determinants of therapeutic response in advanced bladder cancer.
  • Findings support KDM6A status as a biomarker for guiding precision therapy selection.
  • This study provides a mechanistic basis for KDM6A's role in chemoresistance and immunotherapy response.

Related Concept Videos

Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the...
5.1K
Treatment Resistant Cancers02:56

Treatment Resistant Cancers

Cancer is the second leading cause of death in the United States. A cancer cell is genetically unstable and hence can mutate faster. They can also modify their microenvironment and escape immune surveillance. The difficulties in treating cancer are further compounded by the emergence of rapid resistance to anticancer drugs. The most common ways to attain resistance in cancer cells include alteration in drug transport and metabolism, modification of drug target, elevated DNA damage response, or...
3.7K
Adaptive Mechanisms in Cancer Cells02:53

Adaptive Mechanisms in Cancer Cells

Cancer cells accumulate genetic changes at an abnormally rapid rate due to the defects in the DNA repair mechanisms. From an evolutionary perspective, such genetic instability is advantageous for cancer development. Mutant cell lines accumulate a series of beneficial mutations that contribute to their progression into cancer.
Some of the advantages that cancer cells have on normal cells include - enhanced ability to divide without terminally differentiating, induce new blood vessel formation,...
6.9K
Targeted Cancer Therapies02:57

Targeted Cancer Therapies

The targeted cancer therapies, also known as “molecular targeted therapies,” take advantage of the molecular and genetic differences between the cancer cells and the normal cells. It needs a thorough understanding of the cancer cells to develop drugs that can target specific molecular aspects that drive the growth, progression, and spread of cancer cells without affecting the growth and survival of other normal cells in the body.
There are several types of targeted therapies against...
8.6K
DNA Damage can Stall the Cell Cycle02:36

DNA Damage can Stall the Cell Cycle

In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
10.0K
DNA Damage Can Stall the Cell Cycle02:36

DNA Damage Can Stall the Cell Cycle

In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
3.0K