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Gut microbial interaction networks control autoimmunity to neuroretina
Amy Zhang1, Reiko Horai1, Yingyos Jittayasothorn1
1Laboratory of Immunology, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Biorxiv : the Preprint Server for Biology
|January 9, 2026
Summary
The gut microbiome impacts autoimmune diseases like uveitis. Specific bacteria, such as Akkermansia, may promote disease by altering immune responses and gut metabolites.
Area of Science:
- Immunology
- Microbiology
- Gastroenterology
Background:
- The gut microbiome plays a crucial role in immune-mediated inflammatory diseases.
- Autoimmune uveitis is an ocular inflammation driven by T cells.
- Previous studies indicated gut commensals trigger experimental autoimmune uveitis (sEAU).
Purpose of the Study:
- To investigate the role of gut microbes in autoimmune uveitis.
- To identify specific microbial and metabolic changes associated with uveitis.
- To explore the mechanisms by which gut bacteria influence ocular autoimmunity.
Main Methods:
- Colonization of germ-free mice with human gut flora.
- Analysis of microbiome composition, metabolite levels (short-chain fatty acids - SCFAs), and immune responses (Th1).
- Mechanistic gain-of-function experiments using Akkermansia enrichment.
Main Results:
- Human gut flora induced uveitis in germ-free mice.
- Uveitis severity correlated with increased Akkermansia, decreased SCFA-producing Firmicutes, lower SCFA levels, and a dominant gut Th1 response.
- Akkermansia enrichment exacerbated disease and reproduced observed phenotype shifts.
- An inverse correlation between Akkermansia and Firmicutes was observed in human patients with uveitis, multiple sclerosis, and Crohn's disease.
Conclusions:
- Akkermansia may promote autoimmunity by outcompeting SCFA producers and enhancing Th1 responses.
- Gut microbial composition and metabolite profiles are linked to autoimmune diseases.
- These findings suggest a conserved ecological mechanism of gut microbiome modulation of systemic immune balance and autoimmune diseases.
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