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Updated: Jan 13, 2026

Monitoring eIF4F Assembly by Measuring eIF4E-eIF4G Interaction in Live Cells
Published on: May 1, 2020
ICAM1 mRNA entraps ILF2/ILF3 to inhibit transcription of EIF4E and global protein synthesis
Siyuan Jiang1, Jinghan Sun2, Ya Gao3
1Zhongda Hospital, Medical School, Advanced Institute for Life and Health, Southeast University, Nanjing 210096, China.
Abstract:
The view of mRNA function as a translational template is being challenged beyond translation. However, how these non-canonical mRNAs function independently of their coding protein remains largely unexplored. Here, we found that intercellular adhesion molecule 1 (ICAM1) depletion via CRISPR-Cas9 protein knockout and shRNA-mediated RNA knockdown produces opposite effects on cell proliferation in human cells, which is validated by overexpression of mutated coding ICAM1 mRNA and ICAM1 coding sequence (CDS). Mechanistically, cis-antisense transcripts of ICAM1/ICAM1-AS form a double-stranded RNA (dsRNA), which entraps the interleukin enhancer binding factor 2 (ILF2)/ILF3 complex to inhibit DNA binding in a length-dependent manner, thus suppressing EIF4E transcription and global protein synthesis. Clinical analysis highlights the coordinated downregulation of ICAM1/ICAM1-AS, independent of highly expressed ICAM1 protein in lung cancer. In conclusion, this study reveals a role for ICAM1 mRNA in regulating cellular transcription via the dsRNA-ILF2/3 axis. Our findings challenge the phenotype explanation of gene silencing between RNA knockdown and protein knockout and underscore independent mRNA functions.
Insights
Intercellular adhesion molecule 1 (ICAM1) mRNA regulates transcription independently of its protein. This discovery challenges gene silencing explanations and highlights novel mRNA functions.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- The traditional view of messenger RNA (mRNA) solely as a template for protein translation is evolving.
- The non-canonical functions of mRNA, independent of protein-coding, are not well understood.
- Investigating these independent roles is crucial for a comprehensive understanding of gene regulation.
Purpose of the Study:
- To explore the non-canonical functions of intercellular adhesion molecule 1 (ICAM1) mRNA.
- To elucidate the mechanisms by which ICAM1 mRNA influences cellular processes independently of its protein product.
- To investigate the implications of these findings in human cells and lung cancer.
Main Methods:
- Utilized CRISPR-Cas9 for ICAM1 protein knockout and shRNA for RNA knockdown in human cells.
- Employed overexpression of mutated ICAM1 mRNA and ICAM1 coding sequence (CDS) for validation.
- Analyzed the formation of double-stranded RNA (dsRNA) from ICAM1/ICAM1-AS transcripts.
- Investigated the interaction with interleukin enhancer binding factor 2 (ILF2)/ILF3 complex.
- Performed clinical analysis of ICAM1/ICAM1-AS expression in lung cancer.
Main Results:
- ICAM1 depletion via protein knockout and RNA knockdown yielded opposing effects on cell proliferation.
- ICAM1/ICAM1-AS cis-antisense transcripts formed dsRNA, sequestering the ILF2/ILF3 complex.
- This complex entrapment inhibited DNA binding in a length-dependent manner, suppressing EIF4E transcription and global protein synthesis.
- Clinical data showed coordinated downregulation of ICAM1/ICAM1-AS in lung cancer, irrespective of ICAM1 protein levels.
Conclusions:
- ICAM1 mRNA plays a regulatory role in cellular transcription through the dsRNA-ILF2/3 axis.
- The study challenges the interpretation of gene silencing effects observed between RNA knockdown and protein knockout.
- Findings underscore the significance of independent mRNA functions beyond translation.
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