Proteomics analysis of human mesenchymal stromal/stem cell sarcomagenesis model identifies ALDH1A3 and CD99 as

Jonathan M Gobin1,2, Jun Gao2, Veronica Rey3,4,5

  • 1Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, 451 Smyth Road, Ottawa, ON, K1H 8M5, Canada.

BMC Biology
|January 9, 2026
PubMed
Abstract

Insights

Researchers identified Aldehyde Dehydrogenase 1 Family Member A3 (ALDH1A3) and CD99 as key proteins in sarcoma development from mesenchymal stem cells (MSCs). Upregulated ALDH1A3 and downregulated CD99 indicate their roles in cancer progression and potential therapeutic targets.

Area of Science:

  • Oncology
  • Stem Cell Biology
  • Proteomics

Background:

  • Mesenchymal stromal/stem cells (MSCs) are implicated as the cell-of-origin for sarcoma.
  • A stepwise model of sarcomagenesis was created using sequentially oncogenically mutated human MSCs.

Purpose of the Study:

  • To identify protein targets involved in the transformation of MSCs into sarcoma.
  • To investigate the roles of ALDH1A3 and CD99 in sarcomagenesis.

Main Methods:

  • Quantitative mass spectrometry-based (LC-MS/MS) proteomics was employed.
  • ALDH1A3 and CD99 expression and activity were analyzed in normal MSCs, immortalized cells, and sarcoma cells.

Main Results:

  • ALDH1A3 abundance and activity were significantly upregulated in early-phase and transformed cells compared to normal MSCs.
  • CD99 protein and cell-surface levels were downregulated in immortalized and transformed MSCs.
  • Downregulated CD99 was observed in human bone and soft tissue sarcoma subtypes.

Conclusions:

  • Proteomics analysis of an MSC-sarcoma transformation model identified ALDH1A3 and CD99 as potential sarcomagenesis targets.
  • These proteins may enhance understanding of sarcoma development.
  • ALDH1A3 and CD99 represent potential targets for novel therapeutic strategies in sarcoma.