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Programmable Aptamer-Controlled Fibrinogenesis Using Dynamic DNA Networks and Synthetic Transcription Machineries.

Jiantong Dong1, Diva Froim2, Itamar Willner2

  • 1State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Biosensing and Molecular Recognition, Frontiers Science Center for New Organic Matter, Research Center for Analytical Science, College of Chemistry, Nankai University, Tianjin 300071, P. R. China.

Accounts of Chemical Research
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Summary
This summary is machine-generated.

Researchers developed dynamic DNA networks to precisely control blood clot formation. This novel approach uses antithrombin aptamers for temporal modulation of thrombin, offering new possibilities for hemostasis regulation.

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Biotechnology

Background:

  • Fibrinogenesis, the process of fibrin formation, is crucial for hemostasis and clot formation at vascular injury sites.
  • Thrombin is the key enzyme in fibrinogenesis, making its activity a significant medical target.
  • Precise temporal, dose-controlled, and transient regulation of thrombin activity remains a challenge in current therapies.

Purpose of the Study:

  • To introduce dynamic DNA networks, reaction circuits, and transcription machineries for temporal modulation of thrombin activity.
  • To demonstrate the use of antithrombin aptamers within these frameworks for precise control of fibrinogenesis.
  • To explore phototriggered and oscillatory control of blood coagulation.

Main Methods:

  • Utilized constitutional dynamic networks (CDNs) with thrombin-inhibitory aptamers for dynamic regulation of fibrinogenesis.
  • Developed dissipative DNA reaction circuits and dynamic transcription machineries for transient control.
  • Implemented phototriggering and RNA/DNA duplexes with RNase H for temporal activation and inhibition of thrombin.

Main Results:

  • Demonstrated orthogonal dynamic regulatory frameworks leading to upregulated or downregulated fibrinogenesis via phototriggered CDNs.
  • Achieved transient upregulation or downregulation of fibrinogenesis by coupling CDNs to transient reaction modules.
  • Successfully implemented transcription machineries for phototriggered transient and oscillatory inhibition of thrombin, enabling spatiotemporal control of fibrinogenesis.

Conclusions:

  • Dynamic DNA networks provide a versatile platform for precise temporal control of thrombin activity and fibrinogenesis.
  • Phototriggered and oscillatory systems offer advanced spatiotemporal regulation of blood coagulation.
  • These nucleic acid-based frameworks hold significant potential for future therapeutic strategies in hemostasis.