Related Experiment Video
Updated: Jan 13, 2026

Imaging and Analysis of Tissue Orientation and Growth Dynamics in the Developing Drosophila Epithelia During Pupal Stages
Published on: June 2, 2020
Capturing gene-cell duality in a cat's cradle
Anna Laddach1, Fränze Progatzky1,2, Vassilis Pachnis1
1Nervous System Development and Homeostasis Laboratory, The Francis Crick Institute, London NW1 1AT, United Kingdom.
Summary:
CatsCradle is an R package for single-cell analysis that exploits the duality between cells and the genes they express. Our package provides tools to cluster genes, visualize relationships between them, and to explore relationships between gene clusters (programmes) and cell clusters (cell types).
Availability And Implementation:
CatsCradle is available freely as an R Bioconductor package (https://bioconductor.org/packages/CatsCradle) and interfaces directly with Seurat (Hao et al. 2024) and SingleCellExperiment (Amezquita et al. 2020) data structures.
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