METTL3-mediated m6A on nascent RNA coordinates translational and transcriptional programs to activate the NLRP3

Jie Fu1, Xin Zong2, Hong Zhang2

  • 1National Engineering Research Center of Green Feeds and Healthy Livestock Industry, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Animal Nutrition, Ministry of Education, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Animal Nutrition and Feed Science in Eastern China, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China; Zhejiang Key Laboratory of Nutrition and Breeding for High-quality Animal Products, Zhejiang University, Hangzhou 310058, China; Department of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China.

Cell Reports
|January 11, 2026
PubMed

Insights

RNA m6A methylation, regulated by METTL3, is crucial for NLRP3 inflammasome activation. METTL3 loss reduces inflammation and improves metabolic health in various disease models, highlighting its therapeutic potential.

Area of Science:

  • Molecular Biology
  • Immunology
  • Epigenetics

Background:

  • NLRP3 inflammasome activation requires priming and assembly.
  • The role of RNA m6A methylation in coordinating these steps is not well understood.

Purpose of the Study:

  • To investigate how RNA m6A methylation, specifically by METTL3, regulates NLRP3 inflammasome activation.
  • To explore the therapeutic potential of targeting METTL3-mediated m6A in inflammasome-driven diseases.

Main Methods:

  • Myeloid-specific Mettl3 knockout mice models.
  • Lipopolysaccharide (LPS)-induced sepsis, monosodium urate (MSU)-induced arthritis, and diet-induced obesity models.
  • Chromatin-associated RNA sequencing (chrRNA-seq), kethoxal-assisted single-stranded DNA sequencing (KAS-seq), and MeRIP-seq.
  • Pharmacologic STAT3 inhibition and METTL3 catalytic rescue.

Main Results:

  • m6A levels increase during NLRP3 inflammasome activation; METTL3 loss suppresses activation.
  • METTL3 installs m6A on nascent Jak1, Nlrp3, and Il1β RNAs, regulating transcription and chromatin accessibility.
  • A coupled transcriptional-translational circuit involving JAK1-STAT3-C/EBPβ and m6A-YTHDF1 amplifies Nlrp3/Il1β expression.
  • METTL3 inhibition reduces inflammation and improves metabolic outcomes in vivo.

Conclusions:

  • METTL3-mediated m6A is a key regulator of NLRP3 inflammasome activation through a coupled transcriptional-translational circuit.
  • Targeting METTL3-mediated m6A offers a promising therapeutic strategy for inflammasome-driven diseases.

Related Concept Videos

Regulation of the Unfolded Protein Response01:31

Regulation of the Unfolded Protein Response

Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
2.9K
Translational Regulation01:29

Translational Regulation

Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
519
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
14.6K
Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
3.2K
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
8.1K
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
11.7K