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Updated: Jan 13, 2026

Detection of Helicobacter pylori Infection and Antibiotic Resistance via Stool Quantitative Polymerase Chain Reaction Analysis
Published on: May 16, 2025
Piezoelectric printing-based droplet digital PCR for noninvasive and sensitive detection of Helicobacter pylori in
Siyu Li1, Zhaonan Liu2, Chuyao Zhang1
1School of Materials and Chemical Engineering, Xi'an Technological University, Xi'an, 710021, PR China.
Abstract:
Helicobacter pylori (H. pylori), classified by the WHO as a Group I carcinogen, is a major contributor to progressive gastric diseases, and its growing resistance to antibiotics has severely undermined first-line eradication therapies. Conventional stool-based diagnostics face three key limitations: limited ability to detect resistant strains, labor-intensive culture workflows, and insufficient sensitivity in inhibitor-rich matrices. These shortcomings underscore the urgent need for a noninvasive, highly sensitive, and inhibitor-tolerant platform that enables simultaneous pathogen detection and resistance assessment. To address this unmet need, we developed a piezoelectric printing-driven ddPCR platform. By optimizing piezoelectric parameters and oil-phase surfactant formulations, we achieved uniform and stable droplet generation, producing a high-density microarray of ∼30,000 droplets in 3 min. The droplets exhibited excellent thermal stability, enabling robust digital PCR amplification. Using stool samples, the platform simultaneously detected H. pylori infection and clarithromycin resistance mutations. For H. pylori detection, it exhibited a sensitivity of 1 copy/μL, a quantitative linear range of 100-105 copies/μL (R2 = 0.99), and 100 % concordance with commercial assays. This technology provides a scalable, cost-effective, and clinically practical solution for stool-based pathogen detection and antimicrobial resistance surveillance, advancing precision diagnostics in both clinical and public health settings.
Insights
A new piezoelectric printing-driven digital PCR platform offers a sensitive and rapid method for detecting Helicobacter pylori infection and antibiotic resistance from stool samples. This advancement addresses limitations in current diagnostics for gastric disease management.
Area of Science:
- Biotechnology
- Molecular Diagnostics
- Microbiology
Background:
- Helicobacter pylori (H. pylori) is a carcinogen linked to gastric diseases.
- Antibiotic resistance in H. pylori compromises eradication therapies.
- Current stool diagnostics lack sensitivity and struggle with resistant strains.
Purpose of the Study:
- Develop a noninvasive platform for simultaneous H. pylori detection and resistance assessment.
- Overcome limitations of conventional stool-based diagnostic methods.
- Address the urgent need for improved H. pylori diagnostics.
Main Methods:
- Utilized a piezoelectric printing-driven droplet digital PCR (ddPCR) platform.
- Optimized piezoelectric parameters and surfactant formulations for uniform droplet generation.
- Achieved high-density microarray generation (∼30,000 droplets in 3 min) with thermal stability.
Main Results:
- Demonstrated simultaneous detection of H. pylori and clarithromycin resistance mutations in stool.
- Achieved high sensitivity (1 copy/μL) and a wide linear range (10^0-10^5 copies/μL) for H. pylori detection.
- Reported 100% concordance with commercial assays, indicating high accuracy.
Conclusions:
- The developed ddPCR platform is a scalable, cost-effective, and clinically practical solution.
- Enables precise stool-based pathogen detection and antimicrobial resistance surveillance.
- Advances precision diagnostics for clinical and public health applications.

