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Published on: September 20, 2024
AI-driven drug discovery and repurposing using multi-omics for myocardial infarction and heart failure
Ziad Sabry1,2, Harkirat Singh Arora3, Sriram Chandrasekaran2,3,4
1Cellular and Molecular Biology Program, University of Michigan, Ann Arbor, MI 48109, USA.
Insights
Artificial intelligence (AI) and explainable AI (XAI) offer new ways to analyze complex multi-omics data for cardiovascular diseases (CVDs). This approach can accelerate the discovery of new drugs and therapies for conditions like myocardial infarction and heart failure.
Area of Science:
- Cardiovascular research
- Computational biology
- Drug discovery
Background:
- Cardiovascular diseases (CVDs) are a major global health burden, with drug discovery hindered by complex pathologies.
- Existing drug discovery methods struggle with the heterogeneity of CVDs.
- Artificial intelligence (AI), especially explainable AI (XAI), shows promise for analyzing multi-omics data in this field.
Purpose of the Study:
- To review the potential of integrating AI with multi-omics data for cardiovascular drug discovery.
- To explore AI's role in identifying novel therapeutic targets and repurposing drugs for myocardial infarction (MI) and heart failure (HF).
- To highlight current challenges and future directions for AI in CVD drug development.
Main Methods:
- Review of current literature on AI and XAI applications in cardiovascular research.
- Analysis of multi-omics datasets (genomic, transcriptomic, epigenomic, proteomic, metabolomic) using AI-driven methods.
- Discussion of emerging approaches combining AI with mechanistic models.
Main Results:
- AI and XAI can analyze complex multi-omics data to unravel CVD pathologies and identify therapeutic targets.
- AI can enhance the precision of biomarker discovery and drug response prediction.
- Integration of AI with multi-omics data shows potential for accelerating drug discovery for MI and HF.
Conclusions:
- AI and XAI hold significant promise for advancing cardiovascular drug discovery, despite current limitations.
- Addressing challenges like data heterogeneity and model interpretability is crucial for clinical translation.
- Future research should focus on combining AI with mechanistic models for improved biological relevance and therapeutic outcomes in CVDs.
Abstract:
Cardiovascular diseases (CVDs) are the leading causes of morbidity and mortality worldwide. Yet, drug discovery for these conditions faces significant challenges due to the complexity and heterogeneity of their underlying pathology. Recently, artificial intelligence (AI) techniques-particularly explainable AI (XAI)-have emerged as powerful multi-omics data analyzing tools to unravel pathological mechanisms and novel therapeutic targets. However, the application of XAI in cardiovascular drug discovery remains in its infancy. This review discusses the potential for the integration of AI with multi-omics data to identify novel therapeutic targets and repurpose existing drugs for myocardial infarction (MI) and heart failure (HF). This review highlights the current gap in leveraging XAI for CVDs and discusses key challenges such as data heterogeneity, model interpretability, and translational validation. This review also describes emerging approaches, including combining AI with mechanistic models, that aim to enhance the biological relevance of AI predictions. By utilizing genomic, transcriptomic, epigenomic, proteomic, and metabolomic datasets, AI-driven methods can uncover new biomarkers and predict drug responses with greater precision. The application of AI in analyzing large-scale clinical and molecular data offers significant promise in accelerating drug discovery, refining therapeutic strategies, and improving outcomes for patients with CVDs. This review highlights recent advancements, challenges, and future directions for AI-guided drug discovery in the context of MI and HF.
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