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Updated: Jan 13, 2026

RNAscope for In situ Detection of Transcriptionally Active Human Papillomavirus in Head and Neck Squamous Cell Carcinoma
Published on: March 11, 2014
Study on the Association of HPV Subtypes with Oral Squamous Cell Carcinoma
Himadri Chakrabarty1, Omprakash Kumawat2, Mekhala Mukherjee3
1Department of Periodontics, Guru Nanak Institute of Dental Sciences and Research, Panihati, Kolkata, West Bengal, India.
Background:
Oral squamous cell carcinoma (OSCC) is a major public health concern with rising incidence globally. Human papillomavirus (HPV), particularly high-risk subtypes, has been implicated as a possible etiological factor, but the distribution and prevalence of specific subtypes in OSCC remain variable across populations.
Methods:
A cross-sectional analytical study was conducted on 120 histopathologically confirmed OSCC cases and 80 age- and sex-matched healthy controls. DNA was extracted from formalin-fixed paraffin-embedded tumor tissue and control oral mucosal scrapings. Polymerase chain reaction (PCR) with type-specific primers was used to detect HPV DNA. The identified HPV-positive samples were genotyped for subtypes 6, 11, 16, 18, 31, and 33. Statistical analysis was performed using Chi-square and logistic regression, with significance set at P < 0.05.
Results:
Overall HPV positivity was significantly higher in OSCC cases (42.5%) than controls (11.3%) (P < 0.001). High-risk HPV-16 was the most prevalent subtype among cases (28.3%), followed by HPV-18 (9.2%), HPV-33 (3.3%), and HPV-31 (1.7%). Low-risk subtypes HPV-6 and HPV-11 were rare in cases (both 0.8%). In controls, HPV-16 was detected in only 5.0% of subjects. Logistic regression showed HPV-16 positivity was associated with a 6.8-fold increased OSCC risk (95% CI: 3.1-14.7, P < 0.001). Mean age of HPV-positive OSCC patients was 53.6 ± 9.8 years, with a male predominance (M: F ratio 2.4:1).
Conclusion:
High-risk HPV subtypes, particularly HPV-16 and HPV-18, show a strong association with OSCC, highlighting the potential role of HPV vaccination and targeted screening programs in high-incidence regions.
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